BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0125000 Os05g0125000|AK105290
(875 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0125000 DNA-binding SAP domain containing protein 1786 0.0
Os03g0719100 DNA-binding SAP domain containing protein 663 0.0
Os07g0440800 165 2e-40
>Os05g0125000 DNA-binding SAP domain containing protein
Length = 875
Score = 1786 bits (4627), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 862/875 (98%), Positives = 862/875 (98%)
Query: 1 MADLVSSCKDKLAYFRIKELKDILNQLGLPKQGKKQDLIDRVLALLTDEQGQRHHGWGRK 60
MADLVSSCKDKLAYFRIKELKDILNQLGLPKQGKKQDLIDRVLALLTDEQGQRHHGWGRK
Sbjct: 1 MADLVSSCKDKLAYFRIKELKDILNQLGLPKQGKKQDLIDRVLALLTDEQGQRHHGWGRK 60
Query: 61 NSLTKEAVAKIVDDTYRKMQIQCAPDLATRSHSGSDFSFRPIEEAYDSFQPEAKVRCICS 120
NSLTKEAVAKIVDDTYRKMQIQCAPDLATRSHSGSDFSFRPIEEAYDSFQPEAKVRCICS
Sbjct: 61 NSLTKEAVAKIVDDTYRKMQIQCAPDLATRSHSGSDFSFRPIEEAYDSFQPEAKVRCICS 120
Query: 121 STMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLSRADPFWVTAGN 180
STMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLSRADPFWVTAGN
Sbjct: 121 STMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLSRADPFWVTAGN 180
Query: 181 PLLPVKFVSSGVTNDGTSVPQSVEKSFQLSRSDRETVQRQEYDLQVWCMLLNDKVQFRMQ 240
PLLPVKFVSSGVTNDGTSVPQSVEKSFQLSRSDRETVQRQEYDLQVWCMLLNDKVQFRMQ
Sbjct: 181 PLLPVKFVSSGVTNDGTSVPQSVEKSFQLSRSDRETVQRQEYDLQVWCMLLNDKVQFRMQ 240
Query: 241 WPQYAELHVNGISVRVVTRPGSQLLGINGRDDGPLITTCSREGINKICLSRVDARTFCFG 300
WPQYAELHVNGISVRVVTRPGSQLLGINGRDDGPLITTCSREGINKICLSRVDARTFCFG
Sbjct: 241 WPQYAELHVNGISVRVVTRPGSQLLGINGRDDGPLITTCSREGINKICLSRVDARTFCFG 300
Query: 301 VRIAKRRTVAQVLNLVPKEAEGESFEHALARVRRCLGGGDTAENADSDSDLEVVAESVTV 360
VRIAKRRTVAQVLNLVPKEAEGESFEHALARVRRCLGGGDTAENADSDSDLEVVAESVTV
Sbjct: 301 VRIAKRRTVAQVLNLVPKEAEGESFEHALARVRRCLGGGDTAENADSDSDLEVVAESVTV 360
Query: 361 NLRCPNSGSRMRIAGRFKPCIHMGCFDLETFVELNQRSRKWQCPICLKNYSLESLMIDPY 420
NLRCPNSGSRMRIAGRFKPCIHMGCFDLETFVELNQRSRKWQCPICLKNYSLESLMIDPY
Sbjct: 361 NLRCPNSGSRMRIAGRFKPCIHMGCFDLETFVELNQRSRKWQCPICLKNYSLESLMIDPY 420
Query: 421 FNRITSLLRNCNEDVNEVDVKPDGSWRVKGDAASRELSQWHMPDGTLCNPKEDVKPAMQN 480
FNRITSLLRNCNEDVNEVDVKPDGSWRVKGDAASRELSQWHMPDGTLCNPKEDVKPAMQN
Sbjct: 421 FNRITSLLRNCNEDVNEVDVKPDGSWRVKGDAASRELSQWHMPDGTLCNPKEDVKPAMQN 480
Query: 481 GNEQMMEGTSDGQKSLKIGIKRNPNGIWEVSSKADDKKPSVVGNRMQNNSGFRALNNIMH 540
GNEQMMEGTSDGQKSLKIGIKRNPNGIWEVSSKADDKKPSVVGNRMQNNSGFRALNNIMH
Sbjct: 481 GNEQMMEGTSDGQKSLKIGIKRNPNGIWEVSSKADDKKPSVVGNRMQNNSGFRALNNIMH 540
Query: 541 MSNSPTSSYRDGEDPSVNQESNRHVDLSLNNGNNEFDSFSLNFGQACNTDDRPQQQHNAT 600
MSNSPTSSYRDGEDPSVNQESNRHVDLSLNNGNNEFDSFSLNFGQACNTDDRPQQQHNAT
Sbjct: 541 MSNSPTSSYRDGEDPSVNQESNRHVDLSLNNGNNEFDSFSLNFGQACNTDDRPQQQHNAT 600
Query: 601 DVIVLSDSDEENDAMVCPPAVYDNTTTANGSGFPFTTNGIGYTERYQEDAGVGTSGLGLL 660
DVIVLSDSDEENDAMVCPPAVYDNTTTANGSGFPFTTNGIGYTERYQEDAGVGTSGLGLL
Sbjct: 601 DVIVLSDSDEENDAMVCPPAVYDNTTTANGSGFPFTTNGIGYTERYQEDAGVGTSGLGLL 660
Query: 661 SNNVDDFEMNNWQMHSSYQQPEQGFQFFGNDTDVHNTFVGSHNSFGLAPNDYSLDCNVGV 720
SNNVDDFEMNNWQMHSSYQQPEQGFQFFGNDTDVHNTFVGSHNSFGLAPNDYSLDCNVGV
Sbjct: 661 SNNVDDFEMNNWQMHSSYQQPEQGFQFFGNDTDVHNTFVGSHNSFGLAPNDYSLDCNVGV 720
Query: 721 EEASVTPALSVCRNSNEMHGSLVDNPLALVGDDPSLQIFLPSQPSSVPLQEELSERANAP 780
EEASVTPALSVCRNSNEMHGSLVDNPLALVGDDPSLQIFLPSQPSSVPLQEELSERANAP
Sbjct: 721 EEASVTPALSVCRNSNEMHGSLVDNPLALVGDDPSLQIFLPSQPSSVPLQEELSERANAP 780
Query: 781 NGVQSDDWISLTLXXXXXXXXXXXXXDVNSQPQIPSTETGIEPLTDAASAFLSTNIERRS 840
NGVQSDDWISLTL DVNSQPQIPSTETGIEPLTDAASAFLSTNIERRS
Sbjct: 781 NGVQSDDWISLTLAAGGGGNEEPAPADVNSQPQIPSTETGIEPLTDAASAFLSTNIERRS 840
Query: 841 GADLNPRRIENIFSHPRQPRSVRPRLCLSIDTDSE 875
GADLNPRRIENIFSHPRQPRSVRPRLCLSIDTDSE
Sbjct: 841 GADLNPRRIENIFSHPRQPRSVRPRLCLSIDTDSE 875
>Os03g0719100 DNA-binding SAP domain containing protein
Length = 813
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/758 (47%), Positives = 491/758 (64%), Gaps = 65/758 (8%)
Query: 4 LVSSCKDKLAYFRIKELKDILNQLGLPKQGKKQDLIDRVLALLTDEQGQ--RHHGWGRKN 61
L++ CK KL +FRIKELKD+L+QLGLPKQG+KQ+L+D+++A+L+D+Q Q R +G K
Sbjct: 10 LLADCKYKLNHFRIKELKDVLHQLGLPKQGRKQELVDKIIAVLSDQQEQDSRLNGLPNKK 69
Query: 62 SLTKEAVAKIVDDTYRKMQIQCAPDLATRSHSGSDFSFRPIEEAYDSFQPEAKVRCICSS 121
+ KE VAKIVDDT+ KM A+R+ + S +P ++ DS Q + KVRC C
Sbjct: 70 MVGKETVAKIVDDTFAKMNGSTNAVPASRNQTDSGHIVKPKRKSDDSAQLDVKVRCPCGY 129
Query: 122 TMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESA--EVPPVFYCELCRLSRADPFWVTAG 179
+M NDSMI+CE +C QH+ CV+I +KP +S E+PP FYC++CR++RADPFWVT
Sbjct: 130 SMANDSMIKCEGPQCNTQQHVGCVIISEKPADSVPPELPPHFYCDMCRITRADPFWVTVN 189
Query: 180 NPLLPVKFVSSGVTNDGTSVPQSVEKSFQLSRSDRETVQRQEYDLQVWCMLLNDKVQFRM 239
+P+LPV V +DG+ Q EK+F LSR++ E +Q+ EYDLQVWC+L ND V FRM
Sbjct: 190 HPVLPVSITPCKVASDGSYAVQYFEKTFPLSRANWEMLQKDEYDLQVWCILFNDSVPFRM 249
Query: 240 QWPQYAELHVNGISVRVVTRPGSQLLGINGRDDGPLITTCSREGINKICLSRVDARTFCF 299
QWP ++++ +NGI +RVV R +Q LG+NGRDDGP++T REG NKI LSR D+RTFC
Sbjct: 250 QWPLHSDIQINGIPIRVVNRQPTQQLGVNGRDDGPVLTAYVREGSNKIVLSRSDSRTFCL 309
Query: 300 GVRIAKRRTVAQVLNLVPKEAEGESFEHALARVRRCLGGGDTAENADSDSDLEVVAESVT 359
GVRIAKRR+V QVL+LVPKE +GE+F++ALARVRRC+GGG A+NADSDSD+EVVA+SV+
Sbjct: 310 GVRIAKRRSVEQVLSLVPKEQDGENFDNALARVRRCVGGGTEADNADSDSDIEVVADSVS 369
Query: 360 VNLRCPNSGSRMRIAGRFKPCIHMGCFDLETFVELNQRSRKWQCPICLKNYSLESLMIDP 419
VNLRCP +GSR++IAGRFKPC+HMGCFDLE FVELNQRSRKWQCPICLKNYSL++++IDP
Sbjct: 370 VNLRCPMTGSRIKIAGRFKPCVHMGCFDLEAFVELNQRSRKWQCPICLKNYSLDNIIIDP 429
Query: 420 YFNRITSLLRNCNEDVNEVDVKPDGSWRVKGDAASRELSQWHMPDGTLCNP-----KEDV 474
YFNRIT+L+++C +DV+E+DVKPDGSWRVKG A + L+QWH+PDGTLC P K ++
Sbjct: 430 YFNRITALVQSCGDDVSEIDVKPDGSWRVKGGAELKGLAQWHLPDGTLCMPTDTRSKPNI 489
Query: 475 KPAMQNGNEQMMEGTSDGQKSLKIGIKRNPNGIWEVSSKADDKKPSVVGNRMQNNSGFRA 534
+ Q E+ + + G+ LK+GI+RN NG WE++ + D N QN
Sbjct: 490 RIVKQEIKEEPLSEETGGR--LKLGIRRNNNGQWEINKRLD-------SNNGQNGY-IED 539
Query: 535 LNNIMHMSNSPTSSYRDGEDPSVNQESNRHVDLSLNNGNNEFDSFSLNFGQACNTDDRPQ 594
N ++ SN+ + ++G N +FD + N + D P
Sbjct: 540 ENCVVSASNTDDENSKNG---------------IYNPEPGQFDQLTSNI---YDLDSSPM 581
Query: 595 QQH-----NATDVIVLSDSDEENDAMVCPPAVYDNTTTANGSGFPFT---TNGI-GYTER 645
H DVIVLSDSD++N ++ P V ++ NG+ FP +GI G R
Sbjct: 582 DAHFPPAPTEQDVIVLSDSDDDNVMVLSPGDVNFSSAHDNGNAFPPNPPEASGICGEQPR 641
Query: 646 YQEDAGVGTSGLGLLSNNVDDFEMNNWQMHSSYQQPEQGFQFFGNDTDVHNTFVGSHNSF 705
G G L + DD E+ W+ SS Q G Q N ++ N F+ +H
Sbjct: 642 -----GAGPDVTSFL-DGFDDLELPFWE--SSSSQDAAGTQVTDNQCEMQN-FIVNHQFL 692
Query: 706 GLAPNDYSLDCNVGVEEASVT------PALSVCRNSNE 737
++ L N+G AS T AL C++S++
Sbjct: 693 ----HEPILGVNLGGTAASNTLECEHDGALQACQSSDQ 726
>Os07g0440800
Length = 147
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/117 (64%), Positives = 96/117 (82%)
Query: 303 IAKRRTVAQVLNLVPKEAEGESFEHALARVRRCLGGGDTAENADSDSDLEVVAESVTVNL 362
+++ T VL+LVPKE +GE+F AL RV C+GGG NADSDSD+EVVA+SV+VNL
Sbjct: 30 LSRSATHKLVLSLVPKEQDGENFNDALVRVCCCVGGGTETGNADSDSDIEVVADSVSVNL 89
Query: 363 RCPNSGSRMRIAGRFKPCIHMGCFDLETFVELNQRSRKWQCPICLKNYSLESLMIDP 419
R P +GSR++I G+FKPC+HMGCF+LE FVELNQRSR WQCP CLKNYSL++++IDP
Sbjct: 90 RFPMTGSRIKITGQFKPCVHMGCFELEAFVELNQRSRWWQCPTCLKNYSLDNIIIDP 146
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 31,700,726
Number of extensions: 1417099
Number of successful extensions: 3160
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 3156
Number of HSP's successfully gapped: 3
Length of query: 875
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 765
Effective length of database: 11,292,261
Effective search space: 8638579665
Effective search space used: 8638579665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)