Os05g0121200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transmembrane transport protein-like protein.
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Os05g0121200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transmembrane transport protein-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.78 | 0.285 | 11.9 | -0.406 | 0.464 | 1.72 | -0.519 | 0.43 | -0.327 | 18.6 | 26.73 | 340 | -- | -- |
| 36.86 | 0.283 | 11.9 | -0.325 | 0.515 | 1.72 | -0.586 | -- | -0.306 | 18.5 | 27.58 | 348 | -- | -- |
| 37.27 | 0.284 | 11.9 | -0.427 | 0.514 | 1.74 | -- | 0.601 | -0.337 | 18.7 | 27.45 | 361 | -- | -- |
| 37.69 | 0.286 | 11.9 | -0.316 | 0.534 | 1.73 | -- | -- | -0.31 | 18.6 | 27.88 | 360 | -- | -- |
| 39.89 | 0.294 | 11.9 | -0.339 | -- | 1.74 | -- | 0.442 | -0.35 | -- | 26.12 | 1681 | -- | -- |
| 78.97 | 0.417 | 12 | -0.775 | 0.173 | -- | -0.391 | -- | -0.687 | 20.7 | -- | -- | -- | -- |
| 79.28 | 0.417 | 12 | -0.764 | 0.178 | -- | -- | -- | -0.688 | 21.9 | -- | -- | -- | -- |
| 39.73 | 0.294 | 11.9 | -0.224 | -- | 1.68 | -- | -- | -0.306 | -- | 27.14 | 1666 | -- | -- |
| 40.21 | 0.295 | 11.9 | -- | 0.55 | 1.83 | -- | -- | -0.291 | 18.5 | 27.85 | 359 | -- | -- |
| 81.18 | 0.421 | 12 | -0.762 | -- | -- | -- | -- | -0.688 | -- | -- | -- | -- | -- |
| 94.68 | 0.455 | 12 | -- | 0.176 | -- | -- | -- | -0.603 | 21.6 | -- | -- | -- | -- |
| 40.86 | 0.298 | 11.9 | -- | -- | 1.78 | -- | -- | -0.268 | -- | 27.11 | 1666 | -- | -- |
| 96.51 | 0.459 | 12 | -- | -- | -- | -- | -- | -0.604 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.49 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 2 |
| 3 | 34.51 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 37 | 35.30 | temperature | 15 | 1440 | > th | dose dependent | rect. | 19 | 15 |
| 45 | 35.34 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 15 |
| 57 | 35.40 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 125 | 35.71 | temperature | 15 | 1440 | > th | dose dependent | sin | 9 | NA |
| 161 | 35.83 | temperature | 30 | 1440 | < th | dose dependent | sin | 9 | NA |
| 212 | 35.99 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 217 | 36.00 | radiation | 1 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 219 | 36.00 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 7 |
| 230 | 36.01 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 241 | 36.03 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 267 | 36.08 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 269 | 36.09 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 5 |
| 281 | 36.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 282 | 36.13 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 300 | 36.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 304 | 36.17 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 539 | 36.59 | radiation | 1 | 14400 | > th | dose independent | sin | 9 | NA |
| 596 | 36.67 | radiation | 1 | 14400 | < th | dose independent | sin | 8 | NA |
| 856 | 36.92 | temperature | 25 | 4320 | < th | dose dependent | sin | 15 | NA |