BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0121200 Os05g0121200|AK066388
         (381 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0121200  Similar to Transmembrane transport protein-lik...   635   0.0  

>Os05g0121200 Similar to Transmembrane transport protein-like protein
          Length = 381

 Score =  635 bits (1638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/363 (88%), Positives = 322/363 (88%)

Query: 19  FEKLSAPWMIGRGHVALPPSPGRYPAVTVXXXXXXXXXXXXXXXXXXXXDQEDGLSLSSE 78
           FEKLSAPWMIGRGHVALPPSPGRYPAVTV                    DQEDGLSLSSE
Sbjct: 19  FEKLSAPWMIGRGHVALPPSPGRYPAVTVAAASRRTGEGGRRRRRARGADQEDGLSLSSE 78

Query: 79  IEAPSSTPPVRTTDKESTKPASETGITKKGSAIRRVTLVVLAAVFFGVSIALRDGVGKAS 138
           IEAPSSTPPVRTTDKESTKPASETGITKKGSAIRRVTLVVLAAVFFGVSIALRDGVGKAS
Sbjct: 79  IEAPSSTPPVRTTDKESTKPASETGITKKGSAIRRVTLVVLAAVFFGVSIALRDGVGKAS 138

Query: 139 EYFAGYLLEQSLSVDNXXXXXXXXXXXXXPQEYQNRVLSYGIAGAVIFRTVMITLGAATI 198
           EYFAGYLLEQSLSVDN             PQEYQNRVLSYGIAGAVIFRTVMITLGAATI
Sbjct: 139 EYFAGYLLEQSLSVDNLFVFVLVFKYFKVPQEYQNRVLSYGIAGAVIFRTVMITLGAATI 198

Query: 199 QRFEAVNXXXXXXXXFTSYKLFAEEDEESDLSDNFIVKTCQRFIPVTDYYDGDRFFTTQE 258
           QRFEAVN        FTSYKLFAEEDEESDLSDNFIVKTCQRFIPVTDYYDGDRFFTTQE
Sbjct: 199 QRFEAVNLLLALILLFTSYKLFAEEDEESDLSDNFIVKTCQRFIPVTDYYDGDRFFTTQE 258

Query: 259 GLWKATPLLLTVAVIELSDIAFAIDSIPAVFGVTRDPLIVLSSNIFAISGLRSLYVLISE 318
           GLWKATPLLLTVAVIELSDIAFAIDSIPAVFGVTRDPLIVLSSNIFAISGLRSLYVLISE
Sbjct: 259 GLWKATPLLLTVAVIELSDIAFAIDSIPAVFGVTRDPLIVLSSNIFAISGLRSLYVLISE 318

Query: 319 SMSELDYLQPAIGIVLGFIGTKMVFDFFGYHIPTEASLAIVTTCLSGGVILSLRKASTEE 378
           SMSELDYLQPAIGIVLGFIGTKMVFDFFGYHIPTEASLAIVTTCLSGGVILSLRKASTEE
Sbjct: 319 SMSELDYLQPAIGIVLGFIGTKMVFDFFGYHIPTEASLAIVTTCLSGGVILSLRKASTEE 378

Query: 379 KDK 381
           KDK
Sbjct: 379 KDK 381



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,876,917
Number of extensions: 330356
Number of successful extensions: 921
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 920
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 278
Effective length of database: 11,657,759
Effective search space: 3240857002
Effective search space used: 3240857002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)