BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0121200 Os05g0121200|AK066388
         (381 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12130.1  | chr5:3919613-3922154 FORWARD LENGTH=385            347   4e-96

>AT5G12130.1 | chr5:3919613-3922154 FORWARD LENGTH=385
          Length = 384

 Score =  347 bits (891), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 173/269 (64%), Positives = 210/269 (78%)

Query: 109 SAIRRVTLVVLAAVFFGVSIALRDGVGKASEYFAGYLLEQSLSVDNXXXXXXXXXXXXXP 168
           ++ + V L V  AV FG+ I L++GVGKASE+FAGY+LEQSLSVDN             P
Sbjct: 115 TSFKTVALCVGTAVAFGIGIGLKEGVGKASEFFAGYILEQSLSVDNLFVFVLVFKYFKVP 174

Query: 169 QEYQNRVLSYGIAGAVIFRTVMITLGAATIQRFEAVNXXXXXXXXFTSYKLFAEEDEESD 228
             YQN+VL+YGIAGA++FR  +I LG AT+Q+FEAVN        ++S+KLFA E++++D
Sbjct: 175 LMYQNKVLTYGIAGAIVFRFTLILLGTATLQKFEAVNLLLAAVLLYSSFKLFASEEDDTD 234

Query: 229 LSDNFIVKTCQRFIPVTDYYDGDRFFTTQEGLWKATPLLLTVAVIELSDIAFAIDSIPAV 288
           LSDNFIVKTCQRFIPVT  YDG+RFFT  +G+ KATPLLLTVAVIELSDIAFA+DSIPAV
Sbjct: 235 LSDNFIVKTCQRFIPVTSSYDGNRFFTKHDGILKATPLLLTVAVIELSDIAFAVDSIPAV 294

Query: 289 FGVTRDPLIVLSSNIFAISGLRSLYVLISESMSELDYLQPAIGIVLGFIGTKMVFDFFGY 348
           FGVTRDP IVL+SN+FAI GLRSLY LISE M EL+YLQP+I +VLGFIG KM+ DFFG+
Sbjct: 295 FGVTRDPFIVLTSNLFAILGLRSLYTLISEGMDELEYLQPSIAVVLGFIGVKMILDFFGF 354

Query: 349 HIPTEASLAIVTTCLSGGVILSLRKASTE 377
           HI TEASL +V   LS GV+LSL   S++
Sbjct: 355 HISTEASLGVVALSLSTGVLLSLTNKSSD 383



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,311,808
Number of extensions: 215509
Number of successful extensions: 584
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 584
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 281
Effective length of database: 8,364,969
Effective search space: 2350556289
Effective search space used: 2350556289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)