Os05g0117600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0117600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.42 | 0.405 | 5.99 | 2.15 | 0.201 | -1.05 | -0.58 | 2.61 | 0.423 | 17.1 | 25.72 | 1808 | -- | -- |
| 75.97 | 0.406 | 6.07 | 1.55 | 0.0838 | -0.734 | -0.567 | -- | 0.243 | 17.1 | 26.55 | 2386 | -- | -- |
| 74.91 | 0.403 | 5.99 | 2.14 | 0.197 | -1.02 | -- | 2.56 | 0.412 | 15.5 | 25.8 | 1760 | -- | -- |
| 76.41 | 0.407 | 6.06 | 1.54 | 0.159 | -0.745 | -- | -- | 0.265 | 14.4 | 26 | 1736 | -- | -- |
| 76.74 | 0.408 | 5.99 | 2.16 | -- | -0.976 | -- | 2.55 | 0.417 | -- | 25.92 | 1602 | -- | -- |
| 95.03 | 0.457 | 6.07 | 1.31 | 0.15 | -- | 0.226 | -- | 0.215 | 12.3 | -- | -- | -- | -- |
| 95.13 | 0.457 | 6.07 | 1.32 | 0.157 | -- | -- | -- | 0.217 | 13.5 | -- | -- | -- | -- |
| 77.19 | 0.409 | 6.07 | 1.53 | -- | -0.737 | -- | -- | 0.232 | -- | 26.63 | 2424 | -- | -- |
| 133.86 | 0.539 | 6.12 | -- | 0.124 | -0.472 | -- | -- | 0.0246 | 14.4 | 28.44 | 1859 | -- | -- |
| 96.64 | 0.459 | 6.08 | 1.31 | -- | -- | -- | -- | 0.214 | -- | -- | -- | -- | -- |
| 140.74 | 0.555 | 6.11 | -- | 0.134 | -- | -- | -- | 0.0707 | 13.1 | -- | -- | -- | -- |
| 134.23 | 0.54 | 6.12 | -- | -- | -0.441 | -- | -- | 0.0089 | -- | 28.8 | 2424 | -- | -- |
| 141.86 | 0.556 | 6.11 | -- | -- | -- | -- | -- | 0.0686 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.77 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 20 |
| 2 | 74.82 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 19 |
| 5 | 74.96 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 8 | 75.08 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 10 | 75.11 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 11 | 75.11 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 19 |
| 13 | 75.12 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 20 |
| 24 | 75.20 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 11 |
| 25 | 75.21 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 30 | 75.21 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 18 |
| 36 | 75.23 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 62 | 75.29 | temperature | 30 | 14400 | > th | dose independent | sin | 12 | NA |
| 63 | 75.30 | temperature | 30 | 14400 | < th | dose independent | sin | 12 | NA |
| 67 | 75.32 | temperature | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 70 | 75.32 | temperature | 30 | 14400 | > th | dose dependent | sin | 12 | NA |
| 73 | 75.33 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 12 |
| 79 | 75.35 | temperature | 30 | 14400 | > th | dose dependent | rect. | 15 | 19 |
| 97 | 75.40 | temperature | 25 | 1440 | > th | dose dependent | sin | 20 | NA |
| 102 | 75.41 | temperature | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 109 | 75.42 | temperature | 30 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 110 | 75.42 | temperature | 30 | 14400 | > th | dose dependent | rect. | 15 | 4 |
| 186 | 75.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 9 |
| 275 | 75.52 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 309 | 75.54 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 7 |
| 319 | 75.54 | temperature | 25 | 1440 | > th | dose dependent | rect. | 10 | 22 |
| 321 | 75.55 | wind | 5 | 43200 | > th | dose dependent | sin | 5 | NA |
| 346 | 75.57 | temperature | 25 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 357 | 75.58 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 359 | 75.58 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 4 |
| 398 | 75.60 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 22 |
| 406 | 75.61 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 414 | 75.61 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 430 | 75.63 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 434 | 75.63 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 449 | 75.64 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 468 | 75.65 | wind | 7 | 43200 | > th | dose independent | sin | 6 | NA |
| 471 | 75.65 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 504 | 75.66 | temperature | 30 | 14400 | > th | dose dependent | no | NA | NA |
| 643 | 75.67 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 654 | 75.68 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 690 | 75.71 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 13 |
| 741 | 75.74 | wind | 7 | 43200 | < th | dose independent | sin | 6 | NA |
| 748 | 75.74 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 15 |
| 878 | 75.87 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 888 | 75.88 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 8 |
| 910 | 75.91 | wind | 9 | 43200 | < th | dose independent | sin | 11 | NA |
| 945 | 75.94 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 946 | 75.94 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 9 |
| 949 | 75.95 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 23 |
| 951 | 75.95 | wind | 5 | 43200 | > th | dose dependent | rect. | 1 | 14 |
| 971 | 75.98 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 3 |