BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0117600 Os05g0117600|Os05g0117600
         (796 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G46220.2  | chr3:16979174-16983970 FORWARD LENGTH=813          822   0.0  

>AT3G46220.2 | chr3:16979174-16983970 FORWARD LENGTH=813
          Length = 812

 Score =  822 bits (2123), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/802 (54%), Positives = 583/802 (72%), Gaps = 43/802 (5%)

Query: 22  VRLSERNVVELVQKLQERGIIDFELLHTTSGKEYITSDHLKHEIKMEIKKRGRASLVDLS 81
           VRLS+RNVVELVQKLQE G+IDF+LLHT +GKEYIT + L++EI  EI K GR S++DL+
Sbjct: 22  VRLSDRNVVELVQKLQELGVIDFDLLHTVTGKEYITQEQLRNEITREISKLGRVSVIDLA 81

Query: 82  DILGVDLYHVERQSQKVVADDPSLMLINGEIMSQSYWDTVTEEINEKLQERSQIALAEIA 141
           D +GVDLYHVE+Q+Q VV +DP LML+ GEI+SQSYWD++ EEINE+LQE SQIA+AE+A
Sbjct: 82  DTIGVDLYHVEKQAQDVVLNDPGLMLVQGEIISQSYWDSIAEEINERLQECSQIAVAELA 141

Query: 142 AQLHIGSELVVNILEPRLGTIVKGRLEGGQLYTPAYVSRITAMVRGAARGITVPTNLPSV 201
            QL +GSELV ++LEPRLGT+VK RLEGGQLYTPAYV R+TAMVRGA+RGI VP+NL ++
Sbjct: 142 GQLQVGSELVQSVLEPRLGTLVKARLEGGQLYTPAYVERVTAMVRGASRGIFVPSNLSAL 201

Query: 202 WNSLQLQLQEMHGASGVSVEGSFFQSIFNGLLKEGVVLGSVRAGVQWTPA---------- 251
           W  LQ  +QE +GASGV+VE SFFQSIFN LLKE  +LGS+RAG  WTP+          
Sbjct: 202 WAPLQQLVQETNGASGVAVENSFFQSIFNRLLKEEEMLGSLRAGTHWTPSAFATAQKECV 261

Query: 252 ------NSYIGYEVLQKLAIPQPKQYLEARYPDGIALEAVFVHPSVVDMLDAAVGDTIEN 305
                 NSYI YE +QKL I Q  Q+L++RYPDG  L AVF+H S+++MLD+A  D IE 
Sbjct: 262 DSSFSQNSYISYESMQKLGISQAVQFLQSRYPDGTPLAAVFIHSSMIEMLDSATEDAIEQ 321

Query: 306 GQWIDALSVLPSYITGPDATKILSLCPSLQKAIKSSKAVVFGESCVFSNAFIKGIFDRLE 365
             WID+LSVLPS  T  DA K+L LCPS+Q A+K+ KA++ GES V S+ FIKGI+D++E
Sbjct: 322 NSWIDSLSVLPSSFTSQDANKMLLLCPSVQSALKAEKALILGESYVLSSGFIKGIYDQIE 381

Query: 366 KEMDSFGIKHS-AGQGKPSNMSSEHRIGSDGKDLGDNDTSSIGASSDKGPKKKRGKVSGS 424
           KE D+F I+ S A    PS+ SSE              T SI A++DKG  KK+   S S
Sbjct: 382 KEADAFSIQASTATLIHPSSKSSES-------------TESIPANTDKG-SKKKKGKSAS 427

Query: 425 AKGAAVEKDDDNEESIPVKGKKAHRKNKDAGSSG--DAKHGGKKASEKTKEDNTNIFPDD 482
            K A VE   D+EE    K K+  +K +D+ SS   D+K GGKK S K +E N  I PD+
Sbjct: 428 TKAATVETVPDDEEDARPKSKRNQKKGRDSSSSQKLDSKAGGKKESVKAQESNNIIPPDE 487

Query: 483 LIEQKVLTVAPELEELGGSDDL-------NGPLKLLSSHLRPMLMDAWMKKRNTMLSENA 535
            + +K++   PE E+ G S++        +  LK L+ H++PML+++  ++R  + +ENA
Sbjct: 488 WVMKKIVDSVPEFEDDGTSENFFLCTENPDSILKHLADHMKPMLINSLKERRKKIFTENA 547

Query: 536 ERRRRLLDNLQKQLDEAVLDMQLYEKSLDVFEDDPATSAILHKHLLRTMGAPVVDKILLT 595
           +R RRL+D+LQK+LDE+ L+MQLYEK+LD+FEDD +T+ +LH+HLLRT  A + D +L  
Sbjct: 548 DRMRRLIDDLQKKLDESFLNMQLYEKALDLFEDDQSTAVVLHRHLLRTTAATIADTLLHG 607

Query: 596 LHKDNKLKNGMDVEDSEEN--VQLSTADRTSLAKDLPGSLSVKAQALAETLEGKRFDSFM 653
           L   NK+KNG +VE+S+    V L +++RT+LAK+L GSLS KA AL E LEGKR D+FM
Sbjct: 608 LDIHNKMKNGTEVEESKTQDLVLLDSSERTALAKNLNGSLSKKALALVEALEGKRVDTFM 667

Query: 654 DALRDTAEESGLLFKKLDKRLERSMLHSYRKDLTAQVSSENDPISFLPKVVALLFLQAYN 713
              RD AEESGL+ KKLDK+LER++LHSYRKDL +QVS+E+DPI+ L KVV+LLF++ +N
Sbjct: 668 VTFRDLAEESGLVLKKLDKKLERTLLHSYRKDLISQVSTESDPIALLAKVVSLLFIKIHN 727

Query: 714 KALQAPGRAVGAVIALLKDKIPAPTYKVLADYHSTTVKVLALQAAATEDGEDCATDRMLE 773
           KALQAPGRA+ A I+ LK+K+    YK L DY + TV +LAL +A++ +  DC+ DR+L 
Sbjct: 728 KALQAPGRAIAAAISHLKEKLDESAYKTLTDYQTATVTLLALMSASSGEEHDCSADRILT 787

Query: 774 RKEDLEERLMPELKSLVLGTSK 795
           ++E LE + MP L++LVLG S+
Sbjct: 788 KRELLESQ-MPLLRTLVLGDSQ 808



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.131    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 16,424,571
Number of extensions: 727399
Number of successful extensions: 2491
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2491
Number of HSP's successfully gapped: 1
Length of query: 796
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 689
Effective length of database: 8,173,057
Effective search space: 5631236273
Effective search space used: 5631236273
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 116 (49.3 bits)