BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0117600 Os05g0117600|Os05g0117600
         (796 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0117600  Conserved hypothetical protein                     1581   0.0  

>Os05g0117600 Conserved hypothetical protein
          Length = 796

 Score = 1581 bits (4094), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 775/775 (100%), Positives = 775/775 (100%)

Query: 22  VRLSERNVVELVQKLQERGIIDFELLHTTSGKEYITSDHLKHEIKMEIKKRGRASLVDLS 81
           VRLSERNVVELVQKLQERGIIDFELLHTTSGKEYITSDHLKHEIKMEIKKRGRASLVDLS
Sbjct: 22  VRLSERNVVELVQKLQERGIIDFELLHTTSGKEYITSDHLKHEIKMEIKKRGRASLVDLS 81

Query: 82  DILGVDLYHVERQSQKVVADDPSLMLINGEIMSQSYWDTVTEEINEKLQERSQIALAEIA 141
           DILGVDLYHVERQSQKVVADDPSLMLINGEIMSQSYWDTVTEEINEKLQERSQIALAEIA
Sbjct: 82  DILGVDLYHVERQSQKVVADDPSLMLINGEIMSQSYWDTVTEEINEKLQERSQIALAEIA 141

Query: 142 AQLHIGSELVVNILEPRLGTIVKGRLEGGQLYTPAYVSRITAMVRGAARGITVPTNLPSV 201
           AQLHIGSELVVNILEPRLGTIVKGRLEGGQLYTPAYVSRITAMVRGAARGITVPTNLPSV
Sbjct: 142 AQLHIGSELVVNILEPRLGTIVKGRLEGGQLYTPAYVSRITAMVRGAARGITVPTNLPSV 201

Query: 202 WNSLQLQLQEMHGASGVSVEGSFFQSIFNGLLKEGVVLGSVRAGVQWTPANSYIGYEVLQ 261
           WNSLQLQLQEMHGASGVSVEGSFFQSIFNGLLKEGVVLGSVRAGVQWTPANSYIGYEVLQ
Sbjct: 202 WNSLQLQLQEMHGASGVSVEGSFFQSIFNGLLKEGVVLGSVRAGVQWTPANSYIGYEVLQ 261

Query: 262 KLAIPQPKQYLEARYPDGIALEAVFVHPSVVDMLDAAVGDTIENGQWIDALSVLPSYITG 321
           KLAIPQPKQYLEARYPDGIALEAVFVHPSVVDMLDAAVGDTIENGQWIDALSVLPSYITG
Sbjct: 262 KLAIPQPKQYLEARYPDGIALEAVFVHPSVVDMLDAAVGDTIENGQWIDALSVLPSYITG 321

Query: 322 PDATKILSLCPSLQKAIKSSKAVVFGESCVFSNAFIKGIFDRLEKEMDSFGIKHSAGQGK 381
           PDATKILSLCPSLQKAIKSSKAVVFGESCVFSNAFIKGIFDRLEKEMDSFGIKHSAGQGK
Sbjct: 322 PDATKILSLCPSLQKAIKSSKAVVFGESCVFSNAFIKGIFDRLEKEMDSFGIKHSAGQGK 381

Query: 382 PSNMSSEHRIGSDGKDLGDNDTSSIGASSDKGPKKKRGKVSGSAKGAAVEKDDDNEESIP 441
           PSNMSSEHRIGSDGKDLGDNDTSSIGASSDKGPKKKRGKVSGSAKGAAVEKDDDNEESIP
Sbjct: 382 PSNMSSEHRIGSDGKDLGDNDTSSIGASSDKGPKKKRGKVSGSAKGAAVEKDDDNEESIP 441

Query: 442 VKGKKAHRKNKDAGSSGDAKHGGKKASEKTKEDNTNIFPDDLIEQKVLTVAPELEELGGS 501
           VKGKKAHRKNKDAGSSGDAKHGGKKASEKTKEDNTNIFPDDLIEQKVLTVAPELEELGGS
Sbjct: 442 VKGKKAHRKNKDAGSSGDAKHGGKKASEKTKEDNTNIFPDDLIEQKVLTVAPELEELGGS 501

Query: 502 DDLNGPLKLLSSHLRPMLMDAWMKKRNTMLSENAERRRRLLDNLQKQLDEAVLDMQLYEK 561
           DDLNGPLKLLSSHLRPMLMDAWMKKRNTMLSENAERRRRLLDNLQKQLDEAVLDMQLYEK
Sbjct: 502 DDLNGPLKLLSSHLRPMLMDAWMKKRNTMLSENAERRRRLLDNLQKQLDEAVLDMQLYEK 561

Query: 562 SLDVFEDDPATSAILHKHLLRTMGAPVVDKILLTLHKDNKLKNGMDVEDSEENVQLSTAD 621
           SLDVFEDDPATSAILHKHLLRTMGAPVVDKILLTLHKDNKLKNGMDVEDSEENVQLSTAD
Sbjct: 562 SLDVFEDDPATSAILHKHLLRTMGAPVVDKILLTLHKDNKLKNGMDVEDSEENVQLSTAD 621

Query: 622 RTSLAKDLPGSLSVKAQALAETLEGKRFDSFMDALRDTAEESGLLFKKLDKRLERSMLHS 681
           RTSLAKDLPGSLSVKAQALAETLEGKRFDSFMDALRDTAEESGLLFKKLDKRLERSMLHS
Sbjct: 622 RTSLAKDLPGSLSVKAQALAETLEGKRFDSFMDALRDTAEESGLLFKKLDKRLERSMLHS 681

Query: 682 YRKDLTAQVSSENDPISFLPKVVALLFLQAYNKALQAPGRAVGAVIALLKDKIPAPTYKV 741
           YRKDLTAQVSSENDPISFLPKVVALLFLQAYNKALQAPGRAVGAVIALLKDKIPAPTYKV
Sbjct: 682 YRKDLTAQVSSENDPISFLPKVVALLFLQAYNKALQAPGRAVGAVIALLKDKIPAPTYKV 741

Query: 742 LADYHSTTVKVLALQAAATEDGEDCATDRMLERKEDLEERLMPELKSLVLGTSKE 796
           LADYHSTTVKVLALQAAATEDGEDCATDRMLERKEDLEERLMPELKSLVLGTSKE
Sbjct: 742 LADYHSTTVKVLALQAAATEDGEDCATDRMLERKEDLEERLMPELKSLVLGTSKE 796



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.131    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 25,400,926
Number of extensions: 1113906
Number of successful extensions: 3472
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3472
Number of HSP's successfully gapped: 1
Length of query: 796
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 687
Effective length of database: 11,344,475
Effective search space: 7793654325
Effective search space used: 7793654325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)