Os05g0110700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Kinetochore-Ndc80 subunit Spc25 family protein.
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Os05g0110700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Kinetochore-Ndc80 subunit Spc25 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.3 | 0.275 | 10.3 | -0.493 | 0.714 | -0.713 | 0.0094 | 0.842 | -0.104 | 3.41 | 25.47 | 93 | -- | -- |
| 35.23 | 0.276 | 10.3 | -0.369 | 0.719 | -0.753 | 0.3 | -- | -0.081 | 3.38 | 25.43 | 73 | -- | -- |
| 34.3 | 0.273 | 10.3 | -0.497 | 0.716 | -0.712 | -- | 0.857 | -0.106 | 3.42 | 25.54 | 95 | -- | -- |
| 35.46 | 0.277 | 10.3 | -0.362 | 0.724 | -0.784 | -- | -- | -0.0773 | 3.35 | 25.3 | 80 | -- | -- |
| 53.51 | 0.341 | 10.3 | -0.546 | -- | -0.684 | -- | 0.883 | -0.107 | -- | 25.6 | 1130 | -- | -- |
| 44.03 | 0.311 | 10.2 | -0.172 | 0.578 | -- | 0.323 | -- | 0.0845 | 3.75 | -- | -- | -- | -- |
| 44.34 | 0.312 | 10.2 | -0.176 | 0.579 | -- | -- | -- | 0.0826 | 3.68 | -- | -- | -- | -- |
| 54.26 | 0.343 | 10.3 | -0.385 | -- | -0.878 | -- | -- | -0.0395 | -- | 22.8 | 1177 | -- | -- |
| 38.64 | 0.29 | 10.2 | -- | 0.689 | -0.638 | -- | -- | -0.0104 | 3.38 | 25.3 | 70 | -- | -- |
| 62.9 | 0.371 | 10.2 | -0.152 | -- | -- | -- | -- | 0.0981 | -- | -- | -- | -- | -- |
| 45.16 | 0.314 | 10.2 | -- | 0.575 | -- | -- | -- | 0.102 | 3.68 | -- | -- | -- | -- |
| 57.7 | 0.354 | 10.2 | -- | -- | -0.645 | -- | -- | 0.0295 | -- | 23 | 1143 | -- | -- |
| 63.52 | 0.372 | 10.2 | -- | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.90 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 30 | 32.62 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 7 | NA |
| 53 | 32.97 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 123 | 33.53 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 128 | 33.56 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 184 | 33.85 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 22 | 23 |
| 225 | 34.05 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 277 | 34.31 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 279 | 34.31 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 290 | 34.37 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 294 | 34.38 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 297 | 34.41 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 299 | 34.42 | humidity | 90.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 302 | 34.42 | temperature | 25.0 | 90 | < th | dose dependent | no | NA | NA |
| 310 | 34.47 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 314 | 34.48 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 316 | 34.49 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 349 | 34.61 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 353 | 34.63 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 356 | 34.65 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 367 | 34.68 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 381 | 34.71 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 389 | 34.74 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 412 | 34.78 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 7 | 8 |
| 431 | 34.82 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 456 | 34.88 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 503 | 34.98 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 522 | 35.01 | temperature | 10.0 | 90 | > th | dose dependent | sin | 9 | NA |
| 523 | 35.01 | temperature | 30.0 | 270 | < th | dose dependent | sin | 10 | NA |
| 524 | 35.01 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 584 | 35.13 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 589 | 35.15 | humidity | 90.0 | 43200 | < th | dose dependent | sin | 2 | NA |
| 599 | 35.17 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 651 | 35.23 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 18 | 21 |
| 691 | 35.27 | temperature | 30.0 | 90 | < th | dose dependent | sin | 8 | NA |
| 704 | 35.29 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 709 | 35.29 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 6 |
| 710 | 35.29 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 713 | 35.30 | humidity | 70.0 | 43200 | > th | dose independent | sin | 5 | NA |
| 714 | 35.30 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 788 | 35.37 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 819 | 35.40 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 825 | 35.40 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 832 | 35.40 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 7 | 17 |
| 846 | 35.42 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 860 | 35.43 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 864 | 35.43 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 878 | 35.44 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 921 | 35.46 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 925 | 35.46 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 926 | 35.46 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 9 |
| 956 | 35.48 | temperature | 20.0 | 270 | > th | dose independent | rect. | 16 | 22 |
| 973 | 35.49 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 975 | 35.49 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 987 | 35.50 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 22 | 17 |