BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0110700 Os05g0110700|AK102486
         (327 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48210.1  | chr3:17849435-17851396 FORWARD LENGTH=316          122   2e-28

>AT3G48210.1 | chr3:17849435-17851396 FORWARD LENGTH=316
          Length = 315

 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/231 (35%), Positives = 124/231 (53%), Gaps = 13/231 (5%)

Query: 59  ARQTISRQEELSGLNLQLRNLEDGLAEALSVKAGKESKYQLTKETISSTAAINEKLEGMV 118
           A+ T   Q EL  L   LR  ED L + L+VK  KE++    +++IS+T +  E L   +
Sbjct: 54  AQATAQSQVELMNLKADLREAEDELVKVLAVKTRKEARQMGIRDSISATQSRIEVLRRNL 113

Query: 119 TDQRNKRDHHAAVISNHLEAVEALE---AKFIEDETRMKKIEEAVIWYSKFLGFQVVGGE 175
             Q++K+D    +IS  L+A+   +    K  ED+     I EA+ WY+  LGF V  G 
Sbjct: 114 QLQKSKKDDSVRIISQQLQALSKSKDNAGKVTEDKA---DIHEAISWYNHALGFHVEAGH 170

Query: 176 GVKFIFNKIDLQSPDKEYSVTLKLAKDRYNLLQCDPSIKDSEELMKDLNLTNDLFKFVRI 235
           GVKF F  ID + P +E+S T+    D Y LL  D  +    E++++LN TNDLF+FVR+
Sbjct: 171 GVKFTFTNIDAKRPTREFSFTVHYGNDIYTLLDSDLQLDYINEMVQELNKTNDLFRFVRL 230

Query: 236 VRERF----QAEAATVNGGLLM-SSVVCPDASSIPVSPP--MLMPLDSRTE 279
           +RE+F     +E  T +G L   +S +   A +I  S    M  P + R++
Sbjct: 231 MREQFLKSTLSELPTHSGQLQQETSAISASAPAISFSTDTNMSTPENKRSK 281



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.129    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,509,517
Number of extensions: 206795
Number of successful extensions: 877
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 878
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 228
Effective length of database: 8,392,385
Effective search space: 1913463780
Effective search space used: 1913463780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)