Os05g0104800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Eukaryotic translation initiation factor 3 subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f).
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Os05g0104800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Eukaryotic translation initiation factor 3 subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.66 | 0.375 | 11 | -0.427 | 0.532 | 0.816 | 1.47 | 1.45 | -0.332 | 18.9 | 9.462 | 80 | -- | -- |
| 66.07 | 0.379 | 11 | -0.402 | 0.542 | 0.642 | 1.33 | -- | -0.315 | 18.2 | 6 | 70 | -- | -- |
| 68.1 | 0.384 | 11 | -0.444 | 0.561 | 0.682 | -- | 1.39 | -0.339 | 17.6 | 18.09 | 95 | -- | -- |
| 70.43 | 0.391 | 11 | -0.411 | 0.559 | 0.642 | -- | -- | -0.315 | 18.2 | 5.225 | 69 | -- | -- |
| 81.12 | 0.419 | 11 | -0.436 | -- | 0.72 | -- | 1.09 | -0.339 | -- | 5.211 | 174 | -- | -- |
| 72.67 | 0.4 | 11 | -0.42 | 0.671 | -- | 1.13 | -- | -0.298 | 16.6 | -- | -- | -- | -- |
| 75.95 | 0.408 | 11 | -0.412 | 0.677 | -- | -- | -- | -0.292 | 16.3 | -- | -- | -- | -- |
| 82.2 | 0.422 | 11 | -0.449 | -- | 0.72 | -- | -- | -0.35 | -- | -7.504 | 289 | -- | -- |
| 74.89 | 0.403 | 11 | -- | 0.564 | 0.644 | -- | -- | -0.27 | 18.2 | 4.889 | 69 | -- | -- |
| 100.63 | 0.469 | 11 | -0.439 | -- | -- | -- | -- | -0.31 | -- | -- | -- | -- | -- |
| 80.42 | 0.419 | 11 | -- | 0.685 | -- | -- | -- | -0.246 | 16.3 | -- | -- | -- | -- |
| 87.51 | 0.436 | 11 | -- | -- | 0.715 | -- | -- | -0.3 | -- | -13.28 | 288 | -- | -- |
| 105.71 | 0.48 | 11 | -- | -- | -- | -- | -- | -0.262 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.49 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 8 | 6 |
| 2 | 59.53 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 4 | 59.83 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 6 |
| 5 | 59.89 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 15 |
| 7 | 59.91 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 18 | 60.19 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 20 | 60.29 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 28 | 60.57 | humidity | 50.0 | 90 | > th | dose independent | rect. | 8 | 6 |
| 32 | 60.60 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 38 | 60.66 | humidity | 50.0 | 10 | > th | dose independent | rect. | 8 | 6 |
| 56 | 60.77 | radiation | 1.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 67 | 60.94 | radiation | 20.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 74 | 61.05 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 8 | 6 |
| 77 | 61.08 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 80 | 61.12 | radiation | 40.0 | 270 | < th | dose dependent | sin | 7 | NA |
| 85 | 61.19 | radiation | 40.0 | 10 | < th | dose independent | rect. | 12 | 20 |
| 96 | 61.28 | radiation | 1.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 98 | 61.31 | radiation | 40.0 | 90 | < th | dose dependent | sin | 4 | NA |
| 101 | 61.34 | temperature | 15.0 | 90 | > th | dose independent | rect. | 14 | 18 |
| 113 | 61.49 | temperature | 15.0 | 10 | > th | dose independent | rect. | 15 | 17 |
| 125 | 61.58 | radiation | 40.0 | 90 | < th | dose independent | rect. | 11 | 21 |
| 135 | 61.65 | wind | 1.0 | 30 | > th | dose independent | rect. | 8 | 7 |
| 142 | 61.68 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 167 | 61.78 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 6 |
| 170 | 61.78 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 6 |
| 191 | 61.83 | radiation | 40.0 | 90 | < th | dose independent | rect. | 13 | 19 |
| 197 | 61.85 | radiation | 20.0 | 270 | > th | dose independent | rect. | 7 | 4 |
| 202 | 61.88 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 204 | 61.89 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 6 |
| 222 | 61.92 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 6 |
| 223 | 61.92 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 6 |
| 224 | 61.92 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 6 |
| 262 | 61.98 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 15 |
| 263 | 61.99 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 14 | 18 |
| 276 | 62.00 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 19 |
| 278 | 62.00 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 8 | 7 |
| 281 | 62.01 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 14 | 18 |
| 283 | 62.01 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 14 | 18 |
| 287 | 62.03 | wind | 9.0 | 90 | < th | dose independent | rect. | 14 | 18 |
| 288 | 62.03 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 289 | 62.04 | radiation | 1.0 | 90 | > th | dose independent | rect. | 8 | 6 |
| 290 | 62.04 | temperature | 10.0 | 10 | > th | dose independent | rect. | 8 | 7 |
| 292 | 62.04 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 8 | 7 |
| 293 | 62.04 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 8 | 7 |
| 294 | 62.04 | radiation | 1.0 | 10 | > th | dose independent | rect. | 8 | 7 |
| 295 | 62.04 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 8 | 7 |
| 298 | 62.04 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 8 | 7 |
| 313 | 62.10 | wind | 9.0 | 10 | < th | dose independent | rect. | 8 | 6 |
| 322 | 62.12 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 324 | 62.13 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 15 | 17 |
| 327 | 62.13 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 334 | 62.15 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 345 | 62.18 | radiation | 30.0 | 90 | < th | dose independent | sin | 6 | NA |
| 351 | 62.18 | wind | 9.0 | 10 | < th | dose independent | rect. | 15 | 17 |
| 358 | 62.20 | radiation | 40.0 | 270 | < th | dose independent | rect. | 1 | 15 |
| 369 | 62.23 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 14 | 18 |
| 373 | 62.23 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 374 | 62.24 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 7 |
| 377 | 62.24 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 16 | 17 |
| 403 | 62.28 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 410 | 62.31 | humidity | 90.0 | 90 | < th | dose independent | rect. | 8 | 6 |
| 421 | 62.33 | radiation | 20.0 | 270 | > th | dose independent | sin | 9 | NA |
| 448 | 62.36 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 8 | 6 |
| 449 | 62.37 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 463 | 62.39 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 3 | 5 |
| 483 | 62.46 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 488 | 62.48 | humidity | 90.0 | 10 | < th | dose independent | rect. | 8 | 7 |
| 490 | 62.48 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 492 | 62.49 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 7 |
| 501 | 62.51 | humidity | 90.0 | 720 | < th | dose independent | rect. | 20 | 3 |
| 531 | 62.55 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 549 | 62.57 | humidity | 60.0 | 270 | > th | dose independent | rect. | 8 | 2 |
| 612 | 62.64 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 5 |
| 616 | 62.64 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 619 | 62.65 | wind | 7.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 626 | 62.68 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 7 |
| 628 | 62.68 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 638 | 62.71 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 639 | 62.71 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 640 | 62.71 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 7 |
| 644 | 62.71 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 651 | 62.72 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 661 | 62.75 | radiation | 20.0 | 270 | < th | dose independent | sin | 8 | NA |
| 665 | 62.75 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 16 |
| 669 | 62.75 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 671 | 62.76 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 676 | 62.77 | radiation | 30.0 | 90 | > th | dose independent | sin | 6 | NA |
| 678 | 62.77 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 684 | 62.78 | wind | 7.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 692 | 62.79 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 2 |
| 693 | 62.79 | humidity | 50.0 | 10 | > th | dose independent | rect. | 15 | 17 |
| 696 | 62.79 | humidity | 50.0 | 90 | > th | dose independent | rect. | 14 | 18 |
| 697 | 62.79 | radiation | 40.0 | 90 | < th | dose independent | rect. | 9 | 23 |
| 698 | 62.79 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 708 | 62.80 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 19 |
| 717 | 62.81 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 14 | 18 |
| 741 | 62.83 | wind | 5.0 | 270 | < th | dose independent | rect. | 23 | 8 |
| 807 | 62.89 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 827 | 62.92 | temperature | 15.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 835 | 62.93 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 837 | 62.93 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 838 | 62.93 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 841 | 62.93 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 842 | 62.93 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 845 | 62.93 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 853 | 62.94 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 856 | 62.94 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 14 | 18 |
| 869 | 62.97 | temperature | 10.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 870 | 62.97 | temperature | 30.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 871 | 62.97 | humidity | 50.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 873 | 62.97 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 874 | 62.97 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 881 | 62.97 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 885 | 62.97 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 904 | 62.97 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 11 | 21 |
| 942 | 63.03 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 948 | 63.03 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 22 |
| 952 | 63.03 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 957 | 63.04 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 22 |
| 961 | 63.04 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 977 | 63.07 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 8 |
| 986 | 63.07 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 8 |