BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0104800 Os05g0104800|AK070215
(284 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G39990.1 | chr2:16698332-16699929 REVERSE LENGTH=294 372 e-104
AT3G11270.1 | chr3:3528989-3531317 FORWARD LENGTH=311 85 4e-17
AT5G05780.1 | chr5:1735862-1738176 FORWARD LENGTH=309 82 4e-16
>AT2G39990.1 | chr2:16698332-16699929 REVERSE LENGTH=294
Length = 293
Score = 372 bits (956), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/291 (65%), Positives = 229/291 (78%), Gaps = 8/291 (2%)
Query: 2 AAAEGPVLLFPSTSST--------SARVEAVVVFNICDSYVRRPDQAERVIGTLLGSVLP 53
A +E +L F S SST +AR+ +V+FN+CD +VRRPD AERVIGTLLGS+LP
Sbjct: 3 ATSEHTILQFVSPSSTASATTSVLTARIHPLVIFNVCDCFVRRPDSAERVIGTLLGSILP 62
Query: 54 DGTVHVRNSYVVPHNESPDQVALDIEYHHNMYASHHKVNPKEVIXXXXXXXXXXXXXXXL 113
DGTV +RNSY VPHNES DQVA+DI+YHHNM ASH KVN KE I L
Sbjct: 63 DGTVDIRNSYAVPHNESSDQVAVDIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSL 122
Query: 114 IHDFYSREVQSPIHLTVDTGFTRGDASIKAYISSNLSLGDRHLAAQFQEIPLDLRMLEAG 173
IHDFY+REV +PIHLTVDTGFT G+ +IKA++SSNLSLGDR L A FQEIP+DLRM++A
Sbjct: 123 IHDFYAREVPNPIHLTVDTGFTNGEGTIKAFVSSNLSLGDRQLVAHFQEIPVDLRMVDAE 182
Query: 174 KVGFDILKSTIVEKLPNDLEGMESSMEKLYVLIDEIYKYVDDVVEGRVAPDNKIGRFISD 233
+VGFD+LK+T V+KLPNDLEGME +ME+L LI+++YKYVD VV G++APDN IGRFI+D
Sbjct: 183 RVGFDVLKATSVDKLPNDLEGMELTMERLLTLINDVYKYVDSVVGGQIAPDNNIGRFIAD 242
Query: 234 AVASMPKLSPAAFDKLFNDRIQDNLALVYLSSITRTQISIAEKLNTAAQIL 284
AVAS+PKL P FD L ND +QD L L+YLSSITRTQ+S+AEKLNTAAQ+L
Sbjct: 243 AVASLPKLPPQVFDNLVNDSLQDQLLLLYLSSITRTQLSLAEKLNTAAQML 293
>AT3G11270.1 | chr3:3528989-3531317 FORWARD LENGTH=311
Length = 310
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 129/281 (45%), Gaps = 17/281 (6%)
Query: 14 TSSTSAR------VEAVVVFNICDSYVR-RPDQAERVIGTLLGSVLPDGTVHVRNSYVVP 66
T SAR V +V+ +I D Y R D ++RV+G LLGS GTV V NSY VP
Sbjct: 6 TQQISARTIEKVIVHPLVLLSIVDHYNRVAKDTSKRVVGVLLGSS-SRGTVDVTNSYAVP 64
Query: 67 HNESPDQVA---LDIEYHHNMYASHHKVNPKEVIXXXXXXXXXXXXXXXLIHDFYSREVQ 123
E + LD YH +M+ ++N KE I +H ++ V
Sbjct: 65 FEEDDKDTSIWFLDHNYHESMFHMFKRINAKEHIVGWYSTGPKLRENDLDVHALFNGYVP 124
Query: 124 SPIHLTVDTGFTRGDASIKAYISSNLSLGDRHLAAQ--FQEIPLDLRMLEAGKVGFDIL- 180
+P+ + +D KAY + + +Q F +P ++ E ++G + L
Sbjct: 125 NPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQQVFVHVPTEIAAHEVEEIGVEHLL 184
Query: 181 ---KSTIVEKLPNDLEGMESSMEKLYVLIDEIYKYVDDVVEGRVAPDNKIGRFISDAVAS 237
K T + L ++ ++++ L + EI Y+D V+EG++ +++I + D
Sbjct: 185 RDVKDTTISTLATEVTAKLTALKGLDARLREIRTYLDLVIEGKLPLNHEILYHLQDVFNL 244
Query: 238 MPKLSPAAFDKLFNDRIQDNLALVYLSSITRTQISIAEKLN 278
+P L+ K F + D + ++YLSS+ R+ I++ +N
Sbjct: 245 LPNLNVNELVKAFAVKTNDMMLVIYLSSLIRSVIALHSLIN 285
>AT5G05780.1 | chr5:1735862-1738176 FORWARD LENGTH=309
Length = 308
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 129/281 (45%), Gaps = 17/281 (6%)
Query: 14 TSSTSAR-VEAVVV-----FNICDSYVR-RPDQAERVIGTLLGSVLPDGTVHVRNSYVVP 66
T SAR +E VVV +I D Y R D ++RV+G LLGS G V V NSY VP
Sbjct: 6 TQQISARTIEKVVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSS-SRGVVDVTNSYAVP 64
Query: 67 HNES---PDQVALDIEYHHNMYASHHKVNPKEVIXXXXXXXXXXXXXXXLIHDFYSREVQ 123
E P LD YH +M+ ++N KE + +H ++ V
Sbjct: 65 FEEDDKDPSIWFLDHNYHESMFHMFKRINAKEHVVGWYSTGPKLRENDLDVHALFNGYVP 124
Query: 124 SPIHLTVDTGFTRGDASIKAYISSNLSLGDRHLAAQ--FQEIPLDLRMLEAGKVGFDIL- 180
+P+ + +D KAY + + +Q F + ++ E ++G + L
Sbjct: 125 NPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVSTEIAAHEVEEIGVEHLL 184
Query: 181 ---KSTIVEKLPNDLEGMESSMEKLYVLIDEIYKYVDDVVEGRVAPDNKIGRFISDAVAS 237
K T + L ++ ++++ L + EI Y+D V+EG++ +++I + D
Sbjct: 185 RDVKDTTISTLATEVTAKLTALKGLDARLREIRSYLDLVIEGKLPLNHEILYHLQDVFNL 244
Query: 238 MPKLSPAAFDKLFNDRIQDNLALVYLSSITRTQISIAEKLN 278
+P L+ K F+ + D + ++YLSS+ R+ I++ +N
Sbjct: 245 LPNLNVNELVKAFSVKTNDMMLVIYLSSLIRSVIALHNLIN 285
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,438,911
Number of extensions: 214049
Number of successful extensions: 622
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 616
Number of HSP's successfully gapped: 4
Length of query: 284
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 187
Effective length of database: 8,447,217
Effective search space: 1579629579
Effective search space used: 1579629579
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)