Os05g0104100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0104100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.55 | 0.347 | 8.38 | 0.583 | 0.205 | -0.208 | -0.181 | 5.63 | 0.115 | 7.85 | 30.5 | 4105 | -- | -- |
| 55.75 | 0.348 | 8.48 | -0.258 | 0.244 | 0.43 | -0.155 | -- | 0.122 | 7.37 | 29.58 | 4950 | -- | -- |
| 54.6 | 0.344 | 8.38 | 0.584 | 0.204 | -0.211 | -- | 5.7 | 0.117 | 8.31 | 30.7 | 4106 | -- | -- |
| 55.62 | 0.347 | 8.49 | -0.292 | 0.224 | 0.474 | -- | -- | 0.08 | 8.15 | 27.79 | 4640 | -- | -- |
| 56.9 | 0.351 | 8.38 | 0.638 | -- | -0.264 | -- | 6.03 | 0.114 | -- | 30.69 | 4108 | -- | -- |
| 63.52 | 0.374 | 8.5 | -0.148 | 0.209 | -- | -0.287 | -- | 0.0395 | 7.04 | -- | -- | -- | -- |
| 63.69 | 0.374 | 8.5 | -0.152 | 0.209 | -- | -- | -- | 0.0407 | 7.52 | -- | -- | -- | -- |
| 58.2 | 0.355 | 8.49 | -0.28 | -- | 0.47 | -- | -- | 0.0818 | -- | 28.04 | 4439 | -- | -- |
| 57.61 | 0.353 | 8.48 | -- | 0.223 | 0.41 | -- | -- | 0.11 | 7.95 | 28.3 | 4640 | -- | -- |
| 66.02 | 0.38 | 8.5 | -0.149 | -- | -- | -- | -- | 0.044 | -- | -- | -- | -- | -- |
| 64.3 | 0.375 | 8.49 | -- | 0.207 | -- | -- | -- | 0.0577 | 7.57 | -- | -- | -- | -- |
| 59.94 | 0.361 | 8.48 | -- | -- | 0.427 | -- | -- | 0.147 | -- | 29.69 | 4349 | -- | -- |
| 66.61 | 0.381 | 8.5 | -- | -- | -- | -- | -- | 0.0605 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.26 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 13 |
| 2 | 52.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 3 | 52.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 11 |
| 5 | 52.40 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 10 | 52.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 12 | 52.48 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 14 | 52.50 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 15 | 52.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 21 | 52.56 | temperature | 10 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 25 | 52.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 26 | 52.58 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 63 | 52.83 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 70 | 52.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 71 | 52.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 80 | 52.99 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 88 | 53.03 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 191 | 53.53 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 194 | 53.54 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 8 |
| 195 | 53.54 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 11 |
| 214 | 53.59 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 234 | 53.66 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 235 | 53.67 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 7 |
| 247 | 53.69 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 248 | 53.69 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 265 | 53.72 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 287 | 53.79 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 290 | 53.79 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 4 |
| 333 | 53.82 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 16 |
| 340 | 53.83 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 10 |
| 350 | 53.84 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 8 |
| 358 | 53.85 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 362 | 53.86 | temperature | 30 | 4320 | < th | dose independent | rect. | 6 | 6 |
| 368 | 53.87 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 4 |
| 370 | 53.87 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 399 | 53.92 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 7 |
| 404 | 53.93 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 4 |
| 454 | 53.96 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 12 |
| 470 | 53.98 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 9 |
| 477 | 54.00 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 483 | 54.00 | temperature | 30 | 4320 | > th | dose independent | rect. | 17 | 19 |
| 489 | 54.01 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 12 |
| 490 | 54.01 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 19 |
| 531 | 54.07 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 3 |
| 541 | 54.08 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 580 | 54.12 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 8 |
| 582 | 54.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 584 | 54.12 | temperature | 20 | 30 | > th | dose dependent | rect. | 4 | 18 |
| 596 | 54.14 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 638 | 54.18 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 6 |
| 649 | 54.19 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 664 | 54.20 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 5 |
| 671 | 54.21 | temperature | 30 | 4320 | > th | dose dependent | sin | 7 | NA |
| 678 | 54.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 704 | 54.24 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 705 | 54.24 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 5 |
| 746 | 54.27 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 799 | 54.32 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 842 | 54.34 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 853 | 54.35 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 18 |
| 874 | 54.37 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 20 |
| 880 | 54.38 | temperature | 30 | 4320 | > th | dose independent | sin | 9 | NA |
| 886 | 54.38 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 893 | 54.39 | temperature | 30 | 4320 | < th | dose independent | sin | 9 | NA |
| 925 | 54.42 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 942 | 54.45 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 16 |
| 983 | 54.48 | temperature | 30 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 984 | 54.48 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 3 |