BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0104100 Os05g0104100|AK105679
         (936 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0104100  Conserved hypothetical protein                     1663   0.0  

>Os05g0104100 Conserved hypothetical protein
          Length = 936

 Score = 1663 bits (4307), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 832/936 (88%), Positives = 832/936 (88%)

Query: 1   MGSNTPPSRAALEPFXXXXXXXXXXXXXXXXXXVRSAAISSPXXXXXXXXXXXXXXXXDS 60
           MGSNTPPSRAALEPF                  VRSAAISSP                DS
Sbjct: 1   MGSNTPPSRAALEPFATLDPAALAGLPASSPLTVRSAAISSPYLYLGTGGGKLLLFTLDS 60

Query: 61  PSPDFLRLLPIGPTRPVSXXXXXXXXXXXXXXXXXXXXXXXXXXSRPVRRLGXXXXXXXX 120
           PSPDFLRLLPIGPTRPVS                          SRPVRRLG        
Sbjct: 61  PSPDFLRLLPIGPTRPVSAILPLPAVARLLLLADGLLLLADPLLSRPVRRLGSVRNVAAV 120

Query: 121 XXXXXXXXXXXPSCSLAVSVGKKLLLVDLTLHDADELEVRTRDIALVDGVKALAWVGDSV 180
                      PSCSLAVSVGKKLLLVDLTLHDADELEVRTRDIALVDGVKALAWVGDSV
Sbjct: 121 AARASESDDDRPSCSLAVSVGKKLLLVDLTLHDADELEVRTRDIALVDGVKALAWVGDSV 180

Query: 181 FVGTASGYSLFSTTNAQGGDIFTLPESSRPPRVKPLSGGDEXXXXXXXXXXXXXRSGHPV 240
           FVGTASGYSLFSTTNAQGGDIFTLPESSRPPRVKPLSGGDE             RSGHPV
Sbjct: 181 FVGTASGYSLFSTTNAQGGDIFTLPESSRPPRVKPLSGGDEVMLLVDNVGVVVDRSGHPV 240

Query: 241 GSSFVFNTTPDCIAEVYPYVVVAGDSKVDVYRRKNGAHLQAIPFARPGTGGLIVASEDAG 300
           GSSFVFNTTPDCIAEVYPYVVVAGDSKVDVYRRKNGAHLQAIPFARPGTGGLIVASEDAG
Sbjct: 241 GSSFVFNTTPDCIAEVYPYVVVAGDSKVDVYRRKNGAHLQAIPFARPGTGGLIVASEDAG 300

Query: 301 IGSDVVVIATAYKVFCYRKVSAVEQIKALLRRKSYAEAISLLQEFEADGEISNDMISFVH 360
           IGSDVVVIATAYKVFCYRKVSAVEQIKALLRRKSYAEAISLLQEFEADGEISNDMISFVH
Sbjct: 301 IGSDVVVIATAYKVFCYRKVSAVEQIKALLRRKSYAEAISLLQEFEADGEISNDMISFVH 360

Query: 361 AQLGFLLFFDLRFEDAVNHFLLSETMQPAEIFPFIMRDPNRWSDLVPRKRYWGLHAPPKP 420
           AQLGFLLFFDLRFEDAVNHFLLSETMQPAEIFPFIMRDPNRWSDLVPRKRYWGLHAPPKP
Sbjct: 361 AQLGFLLFFDLRFEDAVNHFLLSETMQPAEIFPFIMRDPNRWSDLVPRKRYWGLHAPPKP 420

Query: 421 LEEVIDDGLVTLQQALFLKKAGVDTVVDDDFLSNPPSRADLLEVAIRNIIRYLCASREKD 480
           LEEVIDDGLVTLQQALFLKKAGVDTVVDDDFLSNPPSRADLLEVAIRNIIRYLCASREKD
Sbjct: 421 LEEVIDDGLVTLQQALFLKKAGVDTVVDDDFLSNPPSRADLLEVAIRNIIRYLCASREKD 480

Query: 481 LSSSEMEGVDTLLMYLYRALNLVDDMEKLASSQNSCVVEELESLLDDSGHLRTLAFLYGS 540
           LSSSEMEGVDTLLMYLYRALNLVDDMEKLASSQNSCVVEELESLLDDSGHLRTLAFLYGS
Sbjct: 481 LSSSEMEGVDTLLMYLYRALNLVDDMEKLASSQNSCVVEELESLLDDSGHLRTLAFLYGS 540

Query: 541 KGMCSKSLGIWRILARNYSTGLWKDHAILPETDSLETSVGKMSGEEIAAVEASKILQASS 600
           KGMCSKSLGIWRILARNYSTGLWKDHAILPETDSLETSVGKMSGEEIAAVEASKILQASS
Sbjct: 541 KGMCSKSLGIWRILARNYSTGLWKDHAILPETDSLETSVGKMSGEEIAAVEASKILQASS 600

Query: 601 DQDLVLEHLGWVADIDQELATAILTSEMREKQLSPEKVVAAIDPEKVGIHQRYLQWLIEE 660
           DQDLVLEHLGWVADIDQELATAILTSEMREKQLSPEKVVAAIDPEKVGIHQRYLQWLIEE
Sbjct: 601 DQDLVLEHLGWVADIDQELATAILTSEMREKQLSPEKVVAAIDPEKVGIHQRYLQWLIEE 660

Query: 661 QECDEPHYHTSYALSLSRSAMDAVRLGSNNEERNNKEFDSDMQFIYLLRERLQFFLQSSD 720
           QECDEPHYHTSYALSLSRSAMDAVRLGSNNEERNNKEFDSDMQFIYLLRERLQFFLQSSD
Sbjct: 661 QECDEPHYHTSYALSLSRSAMDAVRLGSNNEERNNKEFDSDMQFIYLLRERLQFFLQSSD 720

Query: 721 LYDPEEVLYVISESELWLEKAILYRKMGQENIVLQILALKLEDSEAAEQYCAEIGRDDAY 780
           LYDPEEVLYVISESELWLEKAILYRKMGQENIVLQILALKLEDSEAAEQYCAEIGRDDAY
Sbjct: 721 LYDPEEVLYVISESELWLEKAILYRKMGQENIVLQILALKLEDSEAAEQYCAEIGRDDAY 780

Query: 781 IQLLDLYLDPKNGKGPMFTAAVRLLHNHGESLDPIQVLERLSADMPLQLASDTILRMLRA 840
           IQLLDLYLDPKNGKGPMFTAAVRLLHNHGESLDPIQVLERLSADMPLQLASDTILRMLRA
Sbjct: 781 IQLLDLYLDPKNGKGPMFTAAVRLLHNHGESLDPIQVLERLSADMPLQLASDTILRMLRA 840

Query: 841 XXXXXXXXXXXXNLSRATNLDARLTRLEERSRHVQLTDESICDSCRARLGTKLFVMYPDD 900
                       NLSRATNLDARLTRLEERSRHVQLTDESICDSCRARLGTKLFVMYPDD
Sbjct: 841 RVHHHRQGQVVHNLSRATNLDARLTRLEERSRHVQLTDESICDSCRARLGTKLFVMYPDD 900

Query: 901 SVVCYRCYRNQGDSASPHGRNFRKGGIFKQSWLVSR 936
           SVVCYRCYRNQGDSASPHGRNFRKGGIFKQSWLVSR
Sbjct: 901 SVVCYRCYRNQGDSASPHGRNFRKGGIFKQSWLVSR 936



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 28,491,458
Number of extensions: 1129248
Number of successful extensions: 2247
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2245
Number of HSP's successfully gapped: 1
Length of query: 936
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 826
Effective length of database: 11,292,261
Effective search space: 9327407586
Effective search space used: 9327407586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)