FiT-DB / Search/ Help/ Sample detail

Os05g0102900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Snf7 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0116) R2 : 0.628
β1 : -0.726 (0.0426) R2dD : 0.247 R2D : 0.243
β2 : 0.598 (0.0276) R2dC : 0.383 R2C : 0.37
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0372 (0.0248) R2dN8 : 0.00245 R2N8 : 0.0104
σ : 0.219
deviance : 21.8
__
_____
C
peak time of C : 0.672
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.56 0.197 12.5 -0.702 0.259 0.479 -0.0132 0.262 0.0424 1.37 42.99 10 -- --
17.66 0.196 12.5 -0.705 0.261 0.472 0.173 -- 0.0428 1.27 42.15 9 -- --
17.56 0.195 12.5 -0.702 0.258 0.479 -- 0.251 0.0426 1.36 42.99 9 -- --
17.78 0.196 12.5 -0.711 0.256 0.479 -- -- 0.0419 1.39 42.04 9 -- --
19.03 0.203 12.5 -0.697 -- 0.66 -- 0.196 0.0505 -- 36.89 9 -- --
21.57 0.218 12.5 -0.717 0.598 -- 0.234 -- 0.0384 0.646 -- -- -- --
21.8 0.219 12.5 -0.726 0.598 -- -- -- 0.0372 0.672 -- -- -- --
19.02 0.203 12.5 -0.7 -- 0.593 -- -- 0.0464 -- 27.1 9 -- --
31.05 0.26 12.4 -- 0.207 0.501 -- -- 0.12 1.5 38.01 8 -- --
44.17 0.311 12.5 -0.705 -- -- -- -- 0.0477 -- -- -- -- --
35.7 0.28 12.4 -- 0.587 -- -- -- 0.118 0.614 -- -- -- --
31.95 0.263 12.4 -- -- 0.629 -- -- 0.124 -- 32.15 9 -- --
57.27 0.353 12.4 -- -- -- -- -- 0.126 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.06 temperature 20.0 270 > th dose independent rect. 14 17
2 16.13 temperature 10.0 270 > th dose dependent rect. 14 17
7 16.30 radiation 20.0 270 < th dose independent rect. 1 8
9 16.36 radiation 30.0 90 < th dose independent rect. 3 8
11 16.40 radiation 20.0 90 < th dose independent rect. 3 17
12 16.40 radiation 40.0 270 < th dose dependent rect. 1 8
18 16.43 radiation 40.0 90 < th dose dependent rect. 13 22
28 16.51 radiation 40.0 270 < th dose independent rect. 2 16
34 16.54 radiation 40.0 90 < th dose dependent rect. 3 16
38 16.56 radiation 40.0 90 < th dose dependent rect. 3 8
43 16.62 temperature 20.0 270 > th dose independent rect. 2 17
44 16.62 radiation 40.0 10 < th dose dependent rect. 12 23
51 16.64 radiation 20.0 90 < th dose independent rect. 13 22
53 16.64 radiation 20.0 4320 < th dose dependent rect. 21 8
57 16.65 temperature 10.0 270 > th dose dependent rect. 1 7
58 16.65 radiation 40.0 10 < th dose dependent rect. 3 17
65 16.67 radiation 20.0 90 < th dose independent rect. 15 19
69 16.68 radiation 40.0 90 < th dose dependent rect. 15 18
78 16.70 radiation 40.0 270 < th dose dependent rect. 1 17
81 16.71 wind 1.0 270 > th dose independent rect. 8 17
84 16.71 temperature 15.0 270 > th dose dependent rect. 6 8
85 16.71 radiation 40.0 10 < th dose dependent rect. 3 19
88 16.72 radiation 40.0 14400 < th dose dependent rect. 21 8
92 16.75 radiation 10.0 4320 < th dose independent rect. 21 8
95 16.75 temperature 10.0 10 > th dose dependent rect. 16 17
132 16.86 temperature 20.0 10 > th dose independent rect. 3 17
140 16.88 humidity 70.0 270 > th dose independent rect. 1 7
141 16.88 temperature 20.0 270 > th dose independent rect. 12 9
151 16.89 temperature 20.0 270 > th dose independent rect. 13 7
152 16.89 atmosphere 1000.0 90 > th dose independent rect. 3 16
184 16.94 precipitation 0.1 270 < th dose independent rect. 8 17
186 16.94 precipitation 0.1 270 < th dose dependent rect. 8 17
188 16.95 temperature 20.0 270 > th dose independent rect. 1 7
190 16.95 radiation 20.0 10 < th dose independent rect. 3 17
191 16.95 radiation 20.0 10 < th dose independent rect. 3 19
193 16.96 atmosphere 1015.0 270 < th dose independent rect. 14 17
202 16.98 wind 1.0 270 > th dose independent rect. 7 7
204 16.98 radiation 40.0 10 < th dose independent rect. 3 17
208 16.98 temperature 10.0 270 > th dose dependent rect. 1 18
222 17.00 wind 1.0 270 > th dose independent rect. 19 7
226 17.00 atmosphere 1000.0 10 > th dose independent rect. 3 17
230 17.00 humidity 50.0 270 > th dose dependent rect. 1 7
239 17.02 wind 9.0 270 < th dose independent rect. 1 7
240 17.02 temperature 10.0 270 > th dose independent rect. 1 7
242 17.02 temperature 30.0 270 < th dose independent rect. 1 7
243 17.02 humidity 50.0 270 > th dose independent rect. 1 7
245 17.02 atmosphere 995.0 270 > th dose independent rect. 1 7
246 17.02 atmosphere 1015.0 270 < th dose independent rect. 1 7
248 17.02 wind 9.0 270 < th dose independent rect. 8 17
249 17.02 temperature 10.0 270 > th dose independent rect. 8 17
259 17.04 humidity 70.0 90 > th dose independent rect. 3 6
263 17.04 radiation 1.0 270 < th dose dependent rect. 18 9
280 17.06 wind 7.0 270 < th dose independent rect. 19 7
285 17.06 radiation 40.0 10 < th dose independent rect. 3 19
293 17.08 radiation 40.0 10 < th dose dependent rect. 3 8
300 17.09 precipitation 0.1 270 < th dose independent rect. 19 7
304 17.09 radiation 40.0 270 < th dose independent rect. 14 17
307 17.09 precipitation 0.1 270 < th dose dependent rect. 19 7
313 17.10 radiation 40.0 270 < th dose independent rect. 12 7
325 17.11 precipitation 0.1 270 < th dose independent rect. 7 7
334 17.11 humidity 50.0 90 > th dose dependent rect. 3 7
337 17.11 precipitation 0.1 270 < th dose dependent rect. 7 7
341 17.12 precipitation 0.1 270 < th dose independent rect. 1 7
345 17.12 precipitation 0.1 270 < th dose dependent rect. 1 7
351 17.13 temperature 10.0 270 > th dose independent rect. 7 7
352 17.13 atmosphere 995.0 270 > th dose independent rect. 7 7
353 17.13 atmosphere 1015.0 270 < th dose independent rect. 7 7
364 17.14 humidity 70.0 10 > th dose independent rect. 3 7
382 17.16 temperature 10.0 43200 > th dose independent rect. 10 7
389 17.16 radiation 20.0 10 < th dose dependent sin 23 NA
396 17.17 temperature 10.0 270 > th dose independent rect. 19 7
397 17.17 temperature 30.0 270 < th dose independent rect. 19 7
398 17.17 humidity 50.0 270 > th dose independent rect. 19 7
400 17.17 atmosphere 995.0 270 > th dose independent rect. 19 7
402 17.17 radiation 1.0 270 < th dose independent rect. 19 7
407 17.17 radiation 1.0 270 < th dose independent rect. 18 9
411 17.17 atmosphere 1015.0 270 < th dose independent rect. 2 17
426 17.18 wind 9.0 270 < th dose independent rect. 7 7
442 17.19 temperature 15.0 10 > th dose dependent rect. 9 7
482 17.21 temperature 20.0 30 > th dose independent rect. 12 23
506 17.22 wind 9.0 270 < th dose independent rect. 2 17
512 17.22 temperature 30.0 90 < th dose dependent rect. 19 8
519 17.23 wind 1.0 43200 > th dose independent rect. 9 2
520 17.23 temperature 30.0 90 < th dose independent rect. 3 6
527 17.23 wind 9.0 270 < th dose independent rect. 14 17
530 17.23 atmosphere 995.0 90 > th dose dependent rect. 19 8
548 17.24 radiation 20.0 270 < th dose dependent rect. 1 12
579 17.26 temperature 10.0 90 > th dose dependent rect. 3 6
603 17.28 wind 9.0 90 < th dose independent rect. 3 6
604 17.28 temperature 10.0 90 > th dose independent rect. 3 6
608 17.28 atmosphere 995.0 90 > th dose independent rect. 3 6
609 17.28 atmosphere 1015.0 90 < th dose independent rect. 3 6
625 17.28 radiation 40.0 270 < th dose independent rect. 11 21
667 17.30 radiation 40.0 10 < th dose dependent rect. 1 23
694 17.32 atmosphere 1010.0 270 < th dose independent rect. 13 7
713 17.32 radiation 1.0 270 < th dose dependent rect. 8 18
716 17.33 radiation 1.0 270 > th dose independent rect. 7 7
752 17.34 atmosphere 1000.0 10 > th dose independent rect. 3 19
798 17.35 radiation 1.0 270 < th dose dependent rect. 6 20
799 17.36 precipitation 0.1 90 < th dose independent rect. 3 6
804 17.36 atmosphere 995.0 270 > th dose independent rect. 14 17
808 17.36 precipitation 0.1 90 < th dose dependent rect. 3 6
818 17.37 precipitation 0.1 270 < th dose independent rect. 2 17
822 17.37 radiation 1.0 270 > th dose dependent rect. 5 8
823 17.37 precipitation 0.1 270 < th dose dependent rect. 2 17
824 17.37 radiation 40.0 10 < th dose dependent rect. 3 23
898 17.40 precipitation 0.1 270 < th dose independent rect. 20 17
902 17.40 radiation 10.0 270 < th dose dependent sin 4 NA
909 17.40 precipitation 0.1 270 < th dose dependent rect. 20 17
925 17.41 radiation 1.0 90 > th dose dependent rect. 8 8
942 17.42 temperature 10.0 270 > th dose independent rect. 20 17
943 17.42 atmosphere 995.0 270 > th dose independent rect. 20 17
948 17.42 radiation 1.0 270 > th dose dependent sin 7 NA
953 17.42 radiation 1.0 10 > th dose dependent rect. 9 7
986 17.43 temperature 10.0 10 > th dose dependent rect. 3 6