BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0102900 Os05g0102900|AK065749
(232 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0102900 Snf7 family protein 437 e-123
Os01g0102950 Snf7 family protein 378 e-105
>Os05g0102900 Snf7 family protein
Length = 232
Score = 437 bits (1123), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/232 (94%), Positives = 220/232 (94%)
Query: 1 MKKIFGAKKNQEPPPSIQDATDRISKRGDSVDDKIKKLDAELARYKDQIKKTRPGPAQEA 60
MKKIFGAKKNQEPPPSIQDATDRISKRGDSVDDKIKKLDAELARYKDQIKKTRPGPAQEA
Sbjct: 1 MKKIFGAKKNQEPPPSIQDATDRISKRGDSVDDKIKKLDAELARYKDQIKKTRPGPAQEA 60
Query: 61 IKARAMRVLKQRRMYEGQRDMLYNQTYNLDQVAFASEGLKDAQQTMTAMKAANKELKGMM 120
IKARAMRVLKQRRMYEGQRDMLYNQTYNLDQVAFASEGLKDAQQTMTAMKAANKELKGMM
Sbjct: 61 IKARAMRVLKQRRMYEGQRDMLYNQTYNLDQVAFASEGLKDAQQTMTAMKAANKELKGMM 120
Query: 121 KTVKLEDIDSLQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESN 180
KTVKLEDIDSLQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESN
Sbjct: 121 KTVKLEDIDSLQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESN 180
Query: 181 SVPSYLQPDKESDLDSELNLXXXXXXXXXXXXNRQQEDELGLPTVPQASIRS 232
SVPSYLQPDKESDLDSELNL NRQQEDELGLPTVPQASIRS
Sbjct: 181 SVPSYLQPDKESDLDSELNLPAAPTGHTPAPPNRQQEDELGLPTVPQASIRS 232
>Os01g0102950 Snf7 family protein
Length = 232
Score = 378 bits (970), Expect = e-105, Method: Compositional matrix adjust.
Identities = 183/232 (78%), Positives = 211/232 (90%)
Query: 1 MKKIFGAKKNQEPPPSIQDATDRISKRGDSVDDKIKKLDAELARYKDQIKKTRPGPAQEA 60
MKKIFGAKK+++PPPSIQDAT+RI+KRG+SVDDKIKKLD EL RYK+QI+KTRPGP+Q+A
Sbjct: 1 MKKIFGAKKSKDPPPSIQDATERINKRGESVDDKIKKLDEELGRYKEQIRKTRPGPSQDA 60
Query: 61 IKARAMRVLKQRRMYEGQRDMLYNQTYNLDQVAFASEGLKDAQQTMTAMKAANKELKGMM 120
IKARA+R+LK +RMYE QR+MLYNQTYNLDQVAFA++GLKDAQQTM AMKAANKELKGMM
Sbjct: 61 IKARAIRLLKHKRMYEEQRNMLYNQTYNLDQVAFAADGLKDAQQTMNAMKAANKELKGMM 120
Query: 121 KTVKLEDIDSLQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADMDFESN 180
KTVK+EDID++QDEM DLMDVSNEIQE+LGRSYN+PDD+DEEELMGELDALEADM+FES+
Sbjct: 121 KTVKIEDIDNMQDEMTDLMDVSNEIQESLGRSYNIPDDVDEEELMGELDALEADMEFESS 180
Query: 181 SVPSYLQPDKESDLDSELNLXXXXXXXXXXXXNRQQEDELGLPTVPQASIRS 232
+VPSYLQPDKESD D+ELNL +RQQ DELGLP VP+ASIRS
Sbjct: 181 AVPSYLQPDKESDFDAELNLPAAPTAPAAVPVSRQQVDELGLPAVPRASIRS 232
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.309 0.128 0.339
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,017,182
Number of extensions: 267522
Number of successful extensions: 901
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 902
Number of HSP's successfully gapped: 6
Length of query: 232
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 134
Effective length of database: 11,918,829
Effective search space: 1597123086
Effective search space used: 1597123086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 154 (63.9 bits)