BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0102900 Os05g0102900|AK065749
         (232 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10640.1  | chr3:3323501-3324905 REVERSE LENGTH=236            359   e-100
AT5G04850.2  | chr5:1408246-1409806 REVERSE LENGTH=273            338   2e-93
AT4G29160.1  | chr4:14381019-14382342 FORWARD LENGTH=220           56   2e-08

>AT3G10640.1 | chr3:3323501-3324905 REVERSE LENGTH=236
          Length = 235

 Score =  359 bits (921), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/235 (74%), Positives = 207/235 (88%), Gaps = 3/235 (1%)

Query: 1   MKKIFGAKKNQEPPPSIQDATDRISKRGDSVDDKIKKLDAELARYKDQIKKTRPGPAQEA 60
           M+++FGAKKN EPPPSIQDA+DRI+KRGDSV+DKIKKLD EL +YK+Q+KKTRPGPAQEA
Sbjct: 1   MRRVFGAKKNTEPPPSIQDASDRINKRGDSVEDKIKKLDVELCKYKEQLKKTRPGPAQEA 60

Query: 61  IKARAMRVLKQRRMYEGQRDMLYNQTYNLDQVAFASEGLKDAQQTMTAMKAANKELKGMM 120
           +KARAMRVLKQ++MYEGQRDMLYNQT+NLDQV+FA+EGLKDAQQTMTA+K+ANKELKGMM
Sbjct: 61  VKARAMRVLKQKKMYEGQRDMLYNQTFNLDQVSFAAEGLKDAQQTMTALKSANKELKGMM 120

Query: 121 KTVKLEDIDSLQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMGELDALEADM--DFE 178
           KTVK++DID+LQDEMMDLMDVS+EIQE+LGRSYN+PD +DE++LMGELDALEADM  + E
Sbjct: 121 KTVKIQDIDNLQDEMMDLMDVSSEIQESLGRSYNIPDGLDEDDLMGELDALEADMGNETE 180

Query: 179 SNSVPSYLQPDKESDLDSELNLXXXXXXXXXXXXNR-QQEDELGLPTVPQASIRS 232
           ++ +PSYLQPD E+D DSELNL             R Q EDE GLP VP+AS+R 
Sbjct: 181 ADGMPSYLQPDTETDYDSELNLPAAPTGHNGAPHGRAQAEDEFGLPAVPRASLRG 235



>AT5G04850.2 | chr5:1408246-1409806 REVERSE LENGTH=273
          Length = 272

 Score =  338 bits (867), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 176/272 (64%), Positives = 207/272 (76%), Gaps = 40/272 (14%)

Query: 1   MKKIFGAKKNQEPPPSIQDATDRISKRGDSVDDKIKKLDAELARYKDQIKKTRPGPAQEA 60
           MK+IFGAK N+EPPPSIQDA+DRI+KRGDSV++K+K+LDAEL +YKDQIK+TRPGPA EA
Sbjct: 1   MKRIFGAKNNKEPPPSIQDASDRINKRGDSVEEKVKRLDAELCKYKDQIKRTRPGPALEA 60

Query: 61  IKARAMRVLKQRRMYEGQRDMLYNQTYNLDQVAFASEGLKDAQQTMTAMKAANKELKGMM 120
           IKARAMRVLKQ++MYEGQRDMLYNQT+NLDQV+FA+EGLKDAQQTMTA+K+ANKELKGMM
Sbjct: 61  IKARAMRVLKQKKMYEGQRDMLYNQTFNLDQVSFAAEGLKDAQQTMTALKSANKELKGMM 120

Query: 121 KTVKLEDIDSLQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEELMG-------------- 166
           KTVK++DID+LQD+MMDLMD S+EIQETLGRSYNVPDDIDE++L+G              
Sbjct: 121 KTVKIQDIDNLQDDMMDLMDESSEIQETLGRSYNVPDDIDEDDLLGGKFFLCSLCCLSLG 180

Query: 167 -----------------------ELDALEADM--DFESNSVPSYLQPDKESDLDSELNLX 201
                                  ELDALEADM  + E++ VPSYLQPDKE DL+ ELNL 
Sbjct: 181 LVETISLCLLNSAPYTLYRFVNSELDALEADMGNETEADGVPSYLQPDKEPDLNDELNLP 240

Query: 202 XXXXXXXXXXXNR-QQEDELGLPTVPQASIRS 232
                       R Q EDE GLP VP+AS+R 
Sbjct: 241 SAPMGHTGAPPGRAQAEDEWGLPAVPRASLRG 272



>AT4G29160.1 | chr4:14381019-14382342 FORWARD LENGTH=220
          Length = 219

 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 53/103 (51%)

Query: 62  KARAMRVLKQRRMYEGQRDMLYNQTYNLDQVAFASEGLKDAQQTMTAMKAANKELKGMMK 121
           K  A++ LK++R+YEGQ + L N    +       EG K   +T+ A+++    +K M K
Sbjct: 56  KRAAIQCLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQK 115

Query: 122 TVKLEDIDSLQDEMMDLMDVSNEIQETLGRSYNVPDDIDEEEL 164
              ++D+D   DE+ +  +   +IQE L        D DE+EL
Sbjct: 116 ATNIDDVDKTMDEINEQTENMKQIQEALATPMGAAADFDEDEL 158



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.309    0.128    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,570,680
Number of extensions: 180952
Number of successful extensions: 733
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 730
Number of HSP's successfully gapped: 6
Length of query: 232
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 137
Effective length of database: 8,502,049
Effective search space: 1164780713
Effective search space used: 1164780713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 110 (47.0 bits)