Os04g0682000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Autophagy 4a.
FiT-DB / Search/ Help/ Sample detail
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Os04g0682000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Autophagy 4a.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.53 | 0.299 | 11.4 | -0.586 | 1.25 | 0.481 | 0.111 | -1.14 | -0.324 | 8.88 | 10.01 | 1414 | -- | -- |
| 42.24 | 0.303 | 11.4 | -0.463 | 1.31 | 0.515 | 0.146 | -- | -0.278 | 9.04 | 10.49 | 1336 | -- | -- |
| 40.3 | 0.296 | 11.4 | -0.582 | 1.26 | 0.483 | -- | -1.16 | -0.321 | 8.92 | 10.01 | 1376 | -- | -- |
| 42.25 | 0.303 | 11.4 | -0.403 | 1.3 | 0.459 | -- | -- | -0.249 | 8.99 | 10.3 | 1330 | -- | -- |
| 116 | 0.504 | 11.4 | -0.287 | -- | 0.438 | -- | -0.054 | -0.0972 | -- | 10.03 | 1562 | -- | -- |
| 48.38 | 0.326 | 11.3 | -0.264 | 1.24 | -- | 0.109 | -- | -0.12 | 8.82 | -- | -- | -- | -- |
| 48.42 | 0.326 | 11.3 | -0.26 | 1.23 | -- | -- | -- | -0.12 | 8.82 | -- | -- | -- | -- |
| 83.41 | 0.427 | 11.4 | -0.277 | -- | 0.678 | -- | -- | -0.118 | -- | 0.81 | 1000 | -- | -- |
| 44.97 | 0.312 | 11.3 | -- | 1.32 | 0.396 | -- | -- | -0.181 | 8.9 | 19.98 | 1300 | -- | -- |
| 135.14 | 0.543 | 11.4 | -0.259 | -- | -- | -- | -- | -0.111 | -- | -- | -- | -- | -- |
| 50.2 | 0.331 | 11.3 | -- | 1.23 | -- | -- | -- | -0.0913 | 8.83 | -- | -- | -- | -- |
| 85.43 | 0.432 | 11.4 | -- | -- | 0.676 | -- | -- | -0.0871 | -- | 0.81 | 1000 | -- | -- |
| 136.91 | 0.546 | 11.4 | -- | -- | -- | -- | -- | -0.0822 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.31 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 11 |
| 24 | 38.55 | humidity | 50 | 720 | > th | dose dependent | sin | 14 | NA |
| 31 | 38.66 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 38 | 38.78 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 39 | 38.82 | humidity | 90 | 720 | < th | dose dependent | sin | 14 | NA |
| 41 | 38.82 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 50 | 38.86 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 52 | 38.87 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 87 | 38.99 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 88 | 38.99 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 105 | 39.06 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 109 | 39.10 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 11 |
| 116 | 39.14 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 117 | 39.14 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 154 | 39.25 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 167 | 39.31 | radiation | 10 | 1440 | < th | dose dependent | sin | 18 | NA |
| 175 | 39.35 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 304 | 39.67 | radiation | 1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 315 | 39.70 | radiation | 1 | 270 | < th | dose dependent | rect. | 12 | 15 |
| 416 | 39.91 | humidity | 80 | 1440 | < th | dose independent | rect. | 24 | 15 |
| 421 | 39.92 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 450 | 39.95 | humidity | 70 | 10 | > th | dose dependent | rect. | 18 | 10 |
| 457 | 39.97 | humidity | 90 | 720 | < th | dose independent | rect. | 20 | 3 |
| 462 | 39.98 | radiation | 10 | 1440 | > th | dose independent | sin | 18 | NA |
| 468 | 39.99 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 471 | 39.99 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 477 | 40.00 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 506 | 40.03 | radiation | 1 | 270 | < th | dose independent | rect. | 12 | 15 |
| 512 | 40.04 | humidity | 80 | 720 | > th | dose independent | rect. | 15 | 12 |
| 518 | 40.05 | humidity | 50 | 270 | > th | dose independent | rect. | 7 | 19 |
| 534 | 40.07 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 15 |
| 598 | 40.13 | humidity | 80 | 10 | > th | dose dependent | rect. | 11 | 17 |
| 603 | 40.14 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 16 |
| 643 | 40.20 | humidity | 80 | 720 | > th | dose independent | rect. | 16 | 5 |
| 675 | 40.24 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 689 | 40.26 | humidity | 50 | 270 | > th | dose independent | rect. | 6 | 21 |
| 693 | 40.26 | humidity | 50 | 10 | > th | dose dependent | rect. | 10 | 18 |
| 711 | 40.29 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 766 | 40.34 | humidity | 80 | 720 | > th | dose independent | sin | 16 | NA |
| 772 | 40.34 | humidity | 70 | 10 | > th | dose dependent | rect. | 14 | 14 |
| 775 | 40.34 | humidity | 80 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 779 | 40.35 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 10 |
| 780 | 40.35 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 782 | 40.35 | humidity | 50 | 90 | > th | dose dependent | rect. | 11 | 16 |
| 795 | 40.37 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 20 |
| 838 | 40.42 | radiation | 1 | 90 | < th | dose dependent | sin | 12 | NA |
| 932 | 40.47 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 2 |