Os04g0673400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Uracil-DNA glycosylase (EC 3.2.2.-) (UDG).
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Os04g0673400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Uracil-DNA glycosylase (EC 3.2.2.-) (UDG).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.95 | 0.446 | 7.91 | 1.44 | 0.112 | -1.77 | -0.317 | 3.71 | 0.156 | 5.66 | 20.8 | 1289 | -- | -- |
| 101.21 | 0.469 | 8.06 | 0.405 | 0.165 | -1.51 | -0.0822 | -- | -0.133 | 4.76 | 19.93 | 1247 | -- | -- |
| 90.05 | 0.442 | 7.91 | 1.47 | 0.105 | -1.8 | -- | 3.85 | 0.167 | 4.78 | 20.93 | 1247 | -- | -- |
| 96.61 | 0.458 | 8.04 | 0.477 | 0.211 | -2.29 | -- | -- | -0.114 | 23.4 | 12.7 | 1015 | -- | -- |
| 90.72 | 0.444 | 7.91 | 1.46 | -- | -1.77 | -- | 3.84 | 0.162 | -- | 20.97 | 1248 | -- | -- |
| 173.38 | 0.617 | 8.12 | -0.171 | 0.167 | -- | -0.192 | -- | -0.495 | 11.2 | -- | -- | -- | -- |
| 173.52 | 0.617 | 8.12 | -0.178 | 0.168 | -- | -- | -- | -0.496 | 11.5 | -- | -- | -- | -- |
| 98.4 | 0.462 | 8.04 | 0.454 | -- | -2.14 | -- | -- | -0.124 | -- | 13.01 | 1113 | -- | -- |
| 101.67 | 0.47 | 8.06 | -- | 0.2 | -2.09 | -- | -- | -0.197 | 23 | 12.77 | 986 | -- | -- |
| 175.29 | 0.619 | 8.12 | -0.183 | -- | -- | -- | -- | -0.498 | -- | -- | -- | -- | -- |
| 174.36 | 0.618 | 8.11 | -- | 0.17 | -- | -- | -- | -0.476 | 11.6 | -- | -- | -- | -- |
| 103.15 | 0.473 | 8.05 | -- | -- | -1.96 | -- | -- | -0.202 | -- | 13.46 | 1092 | -- | -- |
| 176.17 | 0.62 | 8.12 | -- | -- | -- | -- | -- | -0.477 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 88.60 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 17 | 89.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 18 |
| 55 | 91.38 | temperature | 20 | 720 | > th | dose dependent | sin | 11 | NA |
| 69 | 91.66 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 79 | 91.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 82 | 91.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 18 |
| 84 | 91.86 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 9 |
| 89 | 91.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 112 | 92.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 14 |
| 119 | 92.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 16 |
| 152 | 92.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 22 |
| 175 | 92.26 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 193 | 92.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 198 | 92.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 289 | 92.84 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 336 | 93.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 516 | 94.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 532 | 94.69 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 540 | 94.81 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 607 | 95.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 635 | 95.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 652 | 95.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 659 | 95.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 23 |