BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0673400 Os04g0673400|Os04g0673400
         (386 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18630.1  | chr3:6411325-6413002 REVERSE LENGTH=331            292   3e-79

>AT3G18630.1 | chr3:6411325-6413002 REVERSE LENGTH=331
          Length = 330

 Score =  292 bits (747), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 137/192 (71%), Positives = 160/192 (83%), Gaps = 4/192 (2%)

Query: 93  PGELHKPYALELCRFVAHERL---HSPVPVYPPPHLVFHALHATPFDRVKAVIIGQDPYH 149
           PGE HKPYA  L  F+  E +    SP+ +YPP HL+F+AL+ TPFDRVK VIIGQDPYH
Sbjct: 118 PGEFHKPYAKSLSDFLEREIITDSKSPL-IYPPQHLIFNALNTTPFDRVKTVIIGQDPYH 176

Query: 150 GPGQAMGLSFSVPEGIKIPSSLANIFKELQKDLGCTVPSHGNLERWAVQGVLMLNTVLTV 209
           GPGQAMGLSFSVPEG K+PSSL NIFKEL KD+GC++P HGNL++WAVQGVL+LN VLTV
Sbjct: 177 GPGQAMGLSFSVPEGEKLPSSLLNIFKELHKDVGCSIPRHGNLQKWAVQGVLLLNAVLTV 236

Query: 210 REHQANSHAKKGWEQFTDAVIKTISLKKSGIVFILWGNSAQAKTRLIDETKHHILKSAHP 269
           R  Q NSHAKKGWEQFTDAVI++IS +K G+VF+LWG  AQ K++LID TKHHIL +AHP
Sbjct: 237 RSKQPNSHAKKGWEQFTDAVIQSISQQKEGVVFLLWGRYAQEKSKLIDATKHHILTAAHP 296

Query: 270 SGLSASRGFFGC 281
           SGLSA+RGFF C
Sbjct: 297 SGLSANRGFFDC 308



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,257,389
Number of extensions: 338121
Number of successful extensions: 698
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 697
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 286
Effective length of database: 8,364,969
Effective search space: 2392381134
Effective search space used: 2392381134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)