BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0673400 Os04g0673400|Os04g0673400
         (386 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0673400  Similar to Uracil-DNA glycosylase (EC 3.2.2.-)...   687   0.0  

>Os04g0673400 Similar to Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)
          Length = 386

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/386 (88%), Positives = 340/386 (88%)

Query: 1   MAPPLPPTAPKTIADYLIRPSKRLRPTXXXXXXXXXXXXXXXXXXXEQRRRADTNXXXXX 60
           MAPPLPPTAPKTIADYLIRPSKRLRPT                   EQRRRADTN     
Sbjct: 1   MAPPLPPTAPKTIADYLIRPSKRLRPTSPAPAAAASAPLSSSSLSPEQRRRADTNLALAR 60

Query: 61  XXXXXXXXESKASGGTAKXXXXXXXXXXXXXXPGELHKPYALELCRFVAHERLHSPVPVY 120
                   ESKASGGTAK              PGELHKPYALELCRFVAHERLHSPVPVY
Sbjct: 61  ARRHLRLAESKASGGTAKLEELLVEETWLEALPGELHKPYALELCRFVAHERLHSPVPVY 120

Query: 121 PPPHLVFHALHATPFDRVKAVIIGQDPYHGPGQAMGLSFSVPEGIKIPSSLANIFKELQK 180
           PPPHLVFHALHATPFDRVKAVIIGQDPYHGPGQAMGLSFSVPEGIKIPSSLANIFKELQK
Sbjct: 121 PPPHLVFHALHATPFDRVKAVIIGQDPYHGPGQAMGLSFSVPEGIKIPSSLANIFKELQK 180

Query: 181 DLGCTVPSHGNLERWAVQGVLMLNTVLTVREHQANSHAKKGWEQFTDAVIKTISLKKSGI 240
           DLGCTVPSHGNLERWAVQGVLMLNTVLTVREHQANSHAKKGWEQFTDAVIKTISLKKSGI
Sbjct: 181 DLGCTVPSHGNLERWAVQGVLMLNTVLTVREHQANSHAKKGWEQFTDAVIKTISLKKSGI 240

Query: 241 VFILWGNSAQAKTRLIDETKHHILKSAHPSGLSASRGFFGCSTCISGLPYMRRHNIYLML 300
           VFILWGNSAQAKTRLIDETKHHILKSAHPSGLSASRGFFGCSTCISGLPYMRRHNIYLML
Sbjct: 241 VFILWGNSAQAKTRLIDETKHHILKSAHPSGLSASRGFFGCSTCISGLPYMRRHNIYLML 300

Query: 301 DNPPMAGTFLKRIRSWRGWDYLPLIGNSRPFEDIMWSVCLTTTSALKWAPLQWKHRKSPI 360
           DNPPMAGTFLKRIRSWRGWDYLPLIGNSRPFEDIMWSVCLTTTSALKWAPLQWKHRKSPI
Sbjct: 301 DNPPMAGTFLKRIRSWRGWDYLPLIGNSRPFEDIMWSVCLTTTSALKWAPLQWKHRKSPI 360

Query: 361 LEKIGTHLDGSLAAKQPVSCTVRRSF 386
           LEKIGTHLDGSLAAKQPVSCTVRRSF
Sbjct: 361 LEKIGTHLDGSLAAKQPVSCTVRRSF 386



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,715,138
Number of extensions: 570975
Number of successful extensions: 1208
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1207
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 283
Effective length of database: 11,657,759
Effective search space: 3299145797
Effective search space used: 3299145797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)