Os04g0645600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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Os04g0645600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.86 | 0.285 | 10.4 | -1.48 | 0.701 | -0.579 | 0.129 | -0.17 | -0.354 | 6.23 | 1.44 | 1429 | -- | -- |
| 36.84 | 0.283 | 10.4 | -1.49 | 0.699 | -0.543 | 0.131 | -- | -0.358 | 6.27 | 1.83 | 1424 | -- | -- |
| 36.88 | 0.283 | 10.4 | -1.48 | 0.704 | -0.542 | -- | -0.0332 | -0.352 | 6.26 | 1.818 | 1424 | -- | -- |
| 36.88 | 0.283 | 10.4 | -1.49 | 0.704 | -0.542 | -- | -- | -0.357 | 6.3 | 1.82 | 1419 | -- | -- |
| 62.17 | 0.367 | 10.4 | -1.47 | -- | -0.643 | -- | -0.147 | -0.365 | -- | 2.141 | 1450 | -- | -- |
| 40.54 | 0.299 | 10.4 | -1.37 | 0.705 | -- | 0.145 | -- | -0.284 | 6.14 | -- | -- | -- | -- |
| 40.59 | 0.298 | 10.4 | -1.37 | 0.706 | -- | -- | -- | -0.284 | 6.14 | -- | -- | -- | -- |
| 62.13 | 0.367 | 10.4 | -1.47 | -- | -0.599 | -- | -- | -0.361 | -- | 2.177 | 1447 | -- | -- |
| 87.57 | 0.436 | 10.3 | -- | 0.713 | -0.359 | -- | -- | -0.209 | 6.13 | 10.05 | 2919 | -- | -- |
| 66.4 | 0.381 | 10.4 | -1.35 | -- | -- | -- | -- | -0.269 | -- | -- | -- | -- | -- |
| 90.26 | 0.444 | 10.3 | -- | 0.686 | -- | -- | -- | -0.131 | 6.25 | -- | -- | -- | -- |
| 93.57 | 0.451 | 10.3 | -- | -- | 0.77 | -- | -- | -0.0732 | -- | 14.9 | 711 | -- | -- |
| 114.69 | 0.5 | 10.3 | -- | -- | -- | -- | -- | -0.118 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.53 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 2 | 35.68 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 21 | 1 |
| 3 | 35.69 | wind | 9.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 5 | 35.76 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 6 |
| 7 | 35.81 | temperature | 25.0 | 720 | > th | dose independent | rect. | 17 | 6 |
| 11 | 35.88 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 14 | 35.93 | wind | 7.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 24 | 36.01 | temperature | 25.0 | 720 | > th | dose independent | rect. | 21 | 1 |
| 27 | 36.04 | radiation | 1.0 | 720 | > th | dose independent | rect. | 17 | 13 |
| 37 | 36.14 | wind | 9.0 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 40 | 36.15 | wind | 9.0 | 14400 | < th | dose independent | rect. | 7 | 5 |
| 48 | 36.22 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 51 | 36.24 | radiation | 1.0 | 720 | > th | dose independent | rect. | 17 | 2 |
| 76 | 36.31 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 97 | 36.37 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 13 |
| 98 | 36.37 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 120 | 36.39 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 124 | 36.40 | temperature | 25.0 | 720 | < th | dose independent | rect. | 17 | 6 |
| 130 | 36.41 | radiation | 1.0 | 1440 | > th | dose independent | sin | 14 | NA |
| 133 | 36.42 | temperature | 25.0 | 720 | < th | dose independent | rect. | 19 | 4 |
| 154 | 36.45 | radiation | 1.0 | 1440 | < th | dose independent | sin | 14 | NA |
| 157 | 36.45 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 164 | 36.46 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 16 | 14 |
| 194 | 36.50 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 200 | 36.51 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 201 | 36.51 | wind | 7.0 | 43200 | > th | dose independent | rect. | 11 | 6 |
| 202 | 36.51 | wind | 9.0 | 14400 | > th | dose independent | rect. | 1 | 13 |
| 223 | 36.53 | wind | 7.0 | 43200 | < th | dose independent | rect. | 11 | 6 |
| 225 | 36.53 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 17 |
| 227 | 36.53 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 12 | 8 |
| 236 | 36.54 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 237 | 36.54 | temperature | 25.0 | 720 | > th | dose dependent | sin | 12 | NA |
| 238 | 36.54 | humidity | 60.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 240 | 36.55 | wind | 9.0 | 14400 | > th | dose independent | sin | 4 | NA |
| 250 | 36.56 | wind | 9.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 251 | 36.56 | radiation | 30.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 267 | 36.56 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 17 | 10 |
| 276 | 36.57 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 17 | 2 |
| 292 | 36.58 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 303 | 36.58 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 17 | 8 |
| 340 | 36.60 | wind | 9.0 | 14400 | < th | dose independent | rect. | 1 | 14 |
| 361 | 36.61 | wind | 9.0 | 14400 | < th | dose independent | sin | 4 | NA |
| 371 | 36.61 | radiation | 1.0 | 720 | > th | dose independent | rect. | 17 | 21 |
| 388 | 36.62 | wind | 9.0 | 14400 | > th | dose dependent | sin | 3 | NA |
| 430 | 36.64 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 17 | 12 |
| 432 | 36.64 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 11 | 16 |
| 523 | 36.68 | wind | 9.0 | 43200 | < th | dose independent | rect. | 12 | 15 |
| 524 | 36.68 | wind | 9.0 | 43200 | < th | dose independent | rect. | 12 | 18 |
| 531 | 36.69 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 550 | 36.70 | wind | 9.0 | 43200 | > th | dose independent | rect. | 12 | 15 |
| 554 | 36.70 | wind | 9.0 | 43200 | > th | dose independent | rect. | 12 | 18 |
| 560 | 36.71 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 599 | 36.73 | humidity | 50.0 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 627 | 36.73 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 14 | 3 |
| 645 | 36.73 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 17 | 16 |
| 650 | 36.73 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 20 |
| 651 | 36.74 | wind | 7.0 | 43200 | > th | dose independent | sin | 22 | NA |
| 673 | 36.74 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 16 | 13 |
| 689 | 36.75 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 696 | 36.75 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 16 | 11 |
| 717 | 36.75 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 4 |
| 725 | 36.76 | wind | 7.0 | 43200 | < th | dose independent | sin | 21 | NA |
| 762 | 36.77 | temperature | 25.0 | 720 | > th | dose independent | rect. | 17 | 1 |
| 767 | 36.77 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 818 | 36.78 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 829 | 36.78 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 1 | 14 |
| 853 | 36.79 | wind | 9.0 | 14400 | > th | dose independent | rect. | 21 | 18 |
| 920 | 36.81 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 927 | 36.81 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 15 | 15 |
| 948 | 36.82 | wind | 9.0 | 14400 | < th | dose independent | rect. | 21 | 18 |