BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0645600 Os04g0645600|AK100006
         (396 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G32140.1  | chr4:15523037-15525195 REVERSE LENGTH=395          420   e-118
AT3G07080.1  | chr3:2241360-2242934 FORWARD LENGTH=439             56   4e-08

>AT4G32140.1 | chr4:15523037-15525195 REVERSE LENGTH=395
          Length = 394

 Score =  420 bits (1079), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/397 (57%), Positives = 272/397 (68%), Gaps = 12/397 (3%)

Query: 6   KYRAGXXXXXXXXXXXXTSAEVTQGIFTKYKQPFAITYLGASLMIIYIPLSFLKDFICX- 64
           +Y+AG            TSAEVTQ IFT YKQPFA+TYLGASLMI+Y+P++FLKD++C  
Sbjct: 4   RYKAGLFLIGTVVIIWVTSAEVTQDIFTAYKQPFAVTYLGASLMIVYLPVAFLKDWLCRY 63

Query: 65  --XXXXXXXXXXXXXXXXXXXFGGCAPLKNGEFQKMLEMESQKTIVIN--YTDVDIPVIE 120
                                 G  +PL++    K++EM  Q TI        +     E
Sbjct: 64  LDRRSSKSNKIPALTDDSSVELG--SPLRH----KIIEMGLQGTITKKDSEEHLSSHEEE 117

Query: 121 ETKPLICGITEFDDVLKEQ-ELSTKEIAMYGLYLCPIWFVTEYLSNAALARXXXXXXXXX 179
           + +PLI  + E    LK++ E++TK+IAMYGLYL PIWFVTEYLSNAALAR         
Sbjct: 118 DERPLIGKVREEVQTLKQRKEITTKQIAMYGLYLAPIWFVTEYLSNAALARTSVASTTVL 177

Query: 180 XXXXXXXXXXIGVLLGQDSINAAKVIAVFISMAGVVMTTMGQTWASDESEISNSGATQRT 239
                     IGV LGQD++N +KV+AVF+SMAGVVMTT+G+TWASDES++++S   +R+
Sbjct: 178 SSTSGLFTLFIGVFLGQDTLNLSKVVAVFVSMAGVVMTTLGKTWASDESQLNSSLNGERS 237

Query: 240 LLGDMFGLLSAMSYGLFTVLLKKFAGEEGEKVDVQKXXXXXXXXXXXXXXXXXXXXXXXG 299
           L+GD+FGLLSA+SYGLFTVLLKKFAGEEGE VDVQK                       G
Sbjct: 238 LMGDLFGLLSAVSYGLFTVLLKKFAGEEGEGVDVQKLFGYIGLFTLVALWWLVWPLTALG 297

Query: 300 IEPKFTIPHSAKVDEVVLANGLIGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADM 359
           IEPKFTIPHS KVDEVVLANG IGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADM
Sbjct: 298 IEPKFTIPHSVKVDEVVLANGFIGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADM 357

Query: 360 IIHGRRYSAVYIFGSVQVFSGFVIANLADRFSRFLGL 396
           +IHGR YSA+YI GS QVF+GFVIAN++D FS+ LGL
Sbjct: 358 MIHGRHYSAIYILGSTQVFAGFVIANISDLFSKKLGL 394



>AT3G07080.1 | chr3:2241360-2242934 FORWARD LENGTH=439
          Length = 438

 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/245 (24%), Positives = 107/245 (43%), Gaps = 12/245 (4%)

Query: 145 EIAMYGLYLCPIWFVTEYLSNAALARXXXXXXXXXXXXXXXXXXXIGVLLGQDSINAAKV 204
            +A   L +CP WF+ +   N +L                     + ++   +     K+
Sbjct: 162 RVAKVSLVICPFWFLAQLTFNVSLKYTTVTSNTILSSASSLFTFLVSLIFLGEKFTWLKL 221

Query: 205 IAVFISMAGVVMTTMGQTWASDESEISNSGATQRTLLGDMFGLLSAMSYGLFTVLLKKFA 264
            +V + M+G ++ +MG      +SE  ++   +  LLGD+  L+SA  Y ++  L++K  
Sbjct: 222 FSVLLCMSGTIIVSMG------DSESKSNAVAKNPLLGDILSLVSAALYAVYITLIRKKL 275

Query: 265 GEEGEK---VDVQKXXXXXXXXXXXXXXXXXXXXXXXGIEPKFTIPHSAKVDEVVLANGL 321
            ++ E+   V + +                         E +F    + K   +V+  GL
Sbjct: 276 PDDDERNGRVSMAQFLGFLGLFNFFIFLPPALILNFTKRE-RFN-ALTLKQFGLVVGKGL 333

Query: 322 IGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMIIHGRRYSAVYIFGSVQVFSGF 381
           + +VLSDY WA +V+ TT  VAT G+++ +PLA + D  + G + S     G+  V  GF
Sbjct: 334 LDNVLSDYLWAKAVLLTTTTVATAGLTIQVPLAAIVDS-LSGNKPSFTDYIGAAAVMVGF 392

Query: 382 VIANL 386
              N+
Sbjct: 393 AGINI 397



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.138    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,135,153
Number of extensions: 200171
Number of successful extensions: 495
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 491
Number of HSP's successfully gapped: 4
Length of query: 396
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 295
Effective length of database: 8,337,553
Effective search space: 2459578135
Effective search space used: 2459578135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)