BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0645600 Os04g0645600|AK100006
         (396 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0645600  Protein of unknown function DUF6, transmembran...   631   0.0  

>Os04g0645600 Protein of unknown function DUF6, transmembrane domain containing
           protein
          Length = 396

 Score =  631 bits (1627), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/396 (81%), Positives = 322/396 (81%)

Query: 1   MGSNLKYRAGXXXXXXXXXXXXTSAEVTQGIFTKYKQPFAITYLGASLMIIYIPLSFLKD 60
           MGSNLKYRAG            TSAEVTQGIFTKYKQPFAITYLGASLMIIYIPLSFLKD
Sbjct: 1   MGSNLKYRAGLVLIVAVVLIWVTSAEVTQGIFTKYKQPFAITYLGASLMIIYIPLSFLKD 60

Query: 61  FICXXXXXXXXXXXXXXXXXXXXFGGCAPLKNGEFQKMLEMESQKTIVINYTDVDIPVIE 120
           FIC                    FGGCAPLKNGEFQKMLEMESQKTIVINYTDVDIPVIE
Sbjct: 61  FICNLLRRSSSSSRVSKVTNKSSFGGCAPLKNGEFQKMLEMESQKTIVINYTDVDIPVIE 120

Query: 121 ETKPLICGITEFDDVLKEQELSTKEIAMYGLYLCPIWFVTEYLSNAALARXXXXXXXXXX 180
           ETKPLICGITEFDDVLKEQELSTKEIAMYGLYLCPIWFVTEYLSNAALAR          
Sbjct: 121 ETKPLICGITEFDDVLKEQELSTKEIAMYGLYLCPIWFVTEYLSNAALARTSVASTTVLS 180

Query: 181 XXXXXXXXXIGVLLGQDSINAAKVIAVFISMAGVVMTTMGQTWASDESEISNSGATQRTL 240
                    IGVLLGQDSINAAKVIAVFISMAGVVMTTMGQTWASDESEISNSGATQRTL
Sbjct: 181 STSGLFTLFIGVLLGQDSINAAKVIAVFISMAGVVMTTMGQTWASDESEISNSGATQRTL 240

Query: 241 LGDMFGLLSAMSYGLFTVLLKKFAGEEGEKVDVQKXXXXXXXXXXXXXXXXXXXXXXXGI 300
           LGDMFGLLSAMSYGLFTVLLKKFAGEEGEKVDVQK                       GI
Sbjct: 241 LGDMFGLLSAMSYGLFTVLLKKFAGEEGEKVDVQKLFGYLGLFSLVLLWWLVWPLTALGI 300

Query: 301 EPKFTIPHSAKVDEVVLANGLIGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMI 360
           EPKFTIPHSAKVDEVVLANGLIGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMI
Sbjct: 301 EPKFTIPHSAKVDEVVLANGLIGSVLSDYFWALSVVWTTPLVATLGMSLTIPLAMVADMI 360

Query: 361 IHGRRYSAVYIFGSVQVFSGFVIANLADRFSRFLGL 396
           IHGRRYSAVYIFGSVQVFSGFVIANLADRFSRFLGL
Sbjct: 361 IHGRRYSAVYIFGSVQVFSGFVIANLADRFSRFLGL 396



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.138    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,006,766
Number of extensions: 277057
Number of successful extensions: 540
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 537
Number of HSP's successfully gapped: 2
Length of query: 396
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 293
Effective length of database: 11,657,759
Effective search space: 3415723387
Effective search space used: 3415723387
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)