Os04g0636600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0636600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.37 | 0.222 | 9.64 | -0.368 | 0.471 | 0.415 | 0.0372 | 0.444 | -0.312 | 8.87 | 25.9 | 270 | -- | -- |
| 22.86 | 0.223 | 9.64 | -0.433 | 0.436 | 0.403 | -0.04 | -- | -0.325 | 8.94 | 25.9 | 233 | -- | -- |
| 22.36 | 0.22 | 9.64 | -0.372 | 0.461 | 0.414 | -- | 0.423 | -0.314 | 8.82 | 25.88 | 251 | -- | -- |
| 22.79 | 0.222 | 9.65 | -0.476 | 0.462 | 0.43 | -- | -- | -0.35 | 8.8 | 25.9 | 242 | -- | -- |
| 30.34 | 0.258 | 9.64 | -0.331 | -- | 0.317 | -- | 0.451 | -0.273 | -- | 25.7 | 99 | -- | -- |
| 30.34 | 0.258 | 9.62 | -0.363 | 0.428 | -- | 0.387 | -- | -0.205 | 12.1 | -- | -- | -- | -- |
| 30.95 | 0.261 | 9.62 | -0.349 | 0.427 | -- | -- | -- | -0.204 | 11.9 | -- | -- | -- | -- |
| 30.88 | 0.259 | 9.64 | -0.447 | -- | 0.36 | -- | -- | -0.266 | -- | 27.1 | 10 | -- | -- |
| 28.57 | 0.249 | 9.63 | -- | 0.454 | 0.373 | -- | -- | -0.277 | 9.24 | 26 | 253 | -- | -- |
| 42.42 | 0.304 | 9.63 | -0.362 | -- | -- | -- | -- | -0.209 | -- | -- | -- | -- | -- |
| 34.16 | 0.273 | 9.61 | -- | 0.431 | -- | -- | -- | -0.165 | 11.9 | -- | -- | -- | -- |
| 36.07 | 0.281 | 9.64 | -- | -- | 0.305 | -- | -- | -0.248 | -- | 25.73 | 104 | -- | -- |
| 45.87 | 0.316 | 9.62 | -- | -- | -- | -- | -- | -0.169 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.50 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 18 |
| 3 | 21.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 6 | 21.73 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 20 |
| 14 | 21.93 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 33 | 22.07 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 44 | 22.19 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 18 |
| 62 | 22.28 | temperature | 20 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 121 | 22.58 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 129 | 22.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 133 | 22.64 | temperature | 10 | 90 | > th | dose dependent | sin | 4 | NA |
| 136 | 22.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 163 | 22.76 | temperature | 10 | 10 | > th | dose dependent | sin | 3 | NA |
| 176 | 22.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 181 | 22.80 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 199 | 22.83 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 213 | 22.86 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 220 | 22.89 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 223 | 22.89 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 241 | 22.92 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 305 | 23.07 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 315 | 23.09 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 352 | 23.16 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 353 | 23.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 14 |
| 374 | 23.18 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 375 | 23.19 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 386 | 23.21 | temperature | 25 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 452 | 23.32 | temperature | 25 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 474 | 23.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 492 | 23.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 511 | 23.41 | temperature | 25 | 270 | > th | dose dependent | sin | 9 | NA |
| 601 | 23.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 620 | 23.56 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 15 |
| 624 | 23.57 | temperature | 30 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 684 | 23.63 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 685 | 23.63 | temperature | 30 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 729 | 23.66 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 749 | 23.67 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 766 | 23.68 | temperature | 30 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 823 | 23.72 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 10 |
| 836 | 23.72 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 858 | 23.74 | temperature | 25 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 877 | 23.75 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 880 | 23.76 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 969 | 23.83 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |