BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0636600 Os04g0636600|AK073550
         (623 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0636600  Conserved hypothetical protein                     1062   0.0  
AK111222                                                           72   1e-12

>Os04g0636600 Conserved hypothetical protein
          Length = 623

 Score = 1062 bits (2746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/623 (86%), Positives = 537/623 (86%)

Query: 1   MLRRCVRDLYXXXXXXXXXXXXSSEVPSPAFLRPRXXXXXXXXXXXXXNTVPGPQGEPSQ 60
           MLRRCVRDLY            SSEVPSPAFLRPR             NTVPGPQGEPSQ
Sbjct: 1   MLRRCVRDLYPLRPLRRIPRPISSEVPSPAFLRPRSKSTKASQQSSTQNTVPGPQGEPSQ 60

Query: 61  SGSNVPKVLLGTLMVXXXXXXXXXXXXIDDQFKDIIFPSTMKEKNIRKIYDDLKAPSEQK 120
           SGSNVPKVLLGTLMV            IDDQFKDIIFPSTMKEKNIRKIYDDLKAPSEQK
Sbjct: 61  SGSNVPKVLLGTLMVGAAAMAAYQAGYIDDQFKDIIFPSTMKEKNIRKIYDDLKAPSEQK 120

Query: 121 VDEKQVVSDPNVDIVQNSNNEAHPQKDLPTEGMGPPEIPTTDEQTVSSEEKEKETLAQGT 180
           VDEKQVVSDPNVDIVQNSNNEAHPQKDLPTEGMGPPEIPTTDEQTVSSEEKEKETLAQGT
Sbjct: 121 VDEKQVVSDPNVDIVQNSNNEAHPQKDLPTEGMGPPEIPTTDEQTVSSEEKEKETLAQGT 180

Query: 181 PQIPDEHGAAAKPLSQDIPVIDINPSVDDKATGEVLPEQTDKTTTSVSPVQSSLATAGPS 240
           PQIPDEHGAAAKPLSQDIPVIDINPSVDDKATGEVLPEQTDKTTTSVSPVQSSLATAGPS
Sbjct: 181 PQIPDEHGAAAKPLSQDIPVIDINPSVDDKATGEVLPEQTDKTTTSVSPVQSSLATAGPS 240

Query: 241 HHVHTDTDGPKDPSSAGAVEHKSLAETYLLQEPDNSKDMGAKESKHDGVISTGTSDDGKI 300
           HHVHTDTDGPKDPSSAGAVEHKSLAETYLLQEPDNSKDMGAKESKHDGVISTGTSDDGKI
Sbjct: 241 HHVHTDTDGPKDPSSAGAVEHKSLAETYLLQEPDNSKDMGAKESKHDGVISTGTSDDGKI 300

Query: 301 VLDIIEAIHAAERKQADADAYMYSXXXXXXXXXXXXXXXAPGLGSSCMXXXXXXXXXXXX 360
           VLDIIEAIHAAERKQADADAYMYS               APGLGSSCM            
Sbjct: 301 VLDIIEAIHAAERKQADADAYMYSEEKRKLKEKYEKELKAPGLGSSCMLKSSNSGKELKK 360

Query: 361 XXXXXAAVIKELQENAEQKLRDELQQKDEETSQQVEKVXXXXXXXXXXXXXXXXXSQIEQ 420
                AAVIKELQENAEQKLRDELQQKDEETSQQVEKV                 SQIEQ
Sbjct: 361 EKLKSAAVIKELQENAEQKLRDELQQKDEETSQQVEKVRELAKAELAAALAKERASQIEQ 420

Query: 421 IAEANLNIDALCMAFYARSEETRQSHSVHKLALGTLALEDALSTGSPIRTEVDQLRKSLE 480
           IAEANLNIDALCMAFYARSEETRQSHSVHKLALGTLALEDALSTGSPIRTEVDQLRKSLE
Sbjct: 421 IAEANLNIDALCMAFYARSEETRQSHSVHKLALGTLALEDALSTGSPIRTEVDQLRKSLE 480

Query: 481 GIDKDSLLELALSSIPEDVLEYGSDTPMDLKQKFNSLKETVRHFSLIPAGGVGMLTHAVA 540
           GIDKDSLLELALSSIPEDVLEYGSDTPMDLKQKFNSLKETVRHFSLIPAGGVGMLTHAVA
Sbjct: 481 GIDKDSLLELALSSIPEDVLEYGSDTPMDLKQKFNSLKETVRHFSLIPAGGVGMLTHAVA 540

Query: 541 HVASSIKIKEDQSGDGIESLLNRVENLIIHGDLSAAAEALERGLQGSEAAEIASEWVKQA 600
           HVASSIKIKEDQSGDGIESLLNRVENLIIHGDLSAAAEALERGLQGSEAAEIASEWVKQA
Sbjct: 541 HVASSIKIKEDQSGDGIESLLNRVENLIIHGDLSAAAEALERGLQGSEAAEIASEWVKQA 600

Query: 601 RKRAIAEQTLTLLHSYASSITFS 623
           RKRAIAEQTLTLLHSYASSITFS
Sbjct: 601 RKRAIAEQTLTLLHSYASSITFS 623



>AK111222 
          Length = 748

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 104/195 (53%), Gaps = 8/195 (4%)

Query: 423 EANLNIDALCMAFYARSEETRQSHSVHKLALGTLALEDALSTGSPIRTEVDQLRKSLEGI 482
           E    ++AL +AF  R+ + R +H V+K++LG L L  AL  G PI    +QL+    G 
Sbjct: 547 ELRAKVNALSLAFDQRTAQVRSAHEVNKISLGVLGLSRALEEGKPIG---EQLQLLAAGC 603

Query: 483 DKDSLLELALSSIPEDVLEYGSDTPMDLKQKFNSLKETVR---HFSLIPAGGVGMLTHAV 539
             D ++E   +S+P      G  T   L+Q+F ++        +F+    GG+  L   V
Sbjct: 604 PGDPVVEAVAASLPASAATAGLPTLQQLQQQFKAVARQAAEAAYFAGEAEGGI--LARLV 661

Query: 540 AHVASSIKIKEDQSGDGIESLLNRVENLIIHGDLSAAAEALERGLQGSEAAEIASEWVKQ 599
           A +A  +K+    +  G +S + +  +L++ G L AAA+AL   + G++AA + + WV+ 
Sbjct: 662 AKLAVQLKVDAGSTDGGFDSNIAQARSLVLQGKLLAAADALSAAVAGTQAAAVVAHWVES 721

Query: 600 ARKRAIAEQTLTLLH 614
           AR RA+A+Q + LL 
Sbjct: 722 ARARAVADQAMKLLQ 736



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.308    0.126    0.342 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,239,827
Number of extensions: 762221
Number of successful extensions: 2093
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2089
Number of HSP's successfully gapped: 2
Length of query: 623
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 516
Effective length of database: 11,448,903
Effective search space: 5907633948
Effective search space used: 5907633948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 159 (65.9 bits)