BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0636600 Os04g0636600|AK073550
         (623 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39690.1  | chr4:18417755-18421633 FORWARD LENGTH=651          280   2e-75

>AT4G39690.1 | chr4:18417755-18421633 FORWARD LENGTH=651
          Length = 650

 Score =  280 bits (716), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 157/352 (44%), Positives = 212/352 (60%), Gaps = 28/352 (7%)

Query: 287 DGVISTGTSDDGKIVLDIIEAIHAAERKQADADAYMYSXXXXXXXXXXXXXXXAPGLGSS 346
           +G+  +  ++DGK+VLD + AIHAAE++QA  DA +++                  L   
Sbjct: 312 EGLKDSYMTEDGKLVLDFLAAIHAAEKQQAHLDAQVFAEELR-------------ALKEK 358

Query: 347 CMXXXXXXXXXXXXXXXXXAAVIKEL--------------QENAEQKLRDELQQKDEETS 392
                              A + KEL              QE  E KL+ EL+QK+ E  
Sbjct: 359 YENELRDLRARELMRIEEAAILDKELKRERTKAAAAIKAIQERMEDKLKAELEQKETEAQ 418

Query: 393 QQVEKVXXXXXXXXXXXXXXXXXSQIEQIAEANLNIDALCMAFYARSEETRQSHSVHKLA 452
             + K                  +QIE++AEA+LNI AL MAFYARSEE RQSHSVHKLA
Sbjct: 419 LALSKAEELAKAEMISTIAKEKAAQIEKMAEADLNIKALSMAFYARSEEARQSHSVHKLA 478

Query: 453 LGTLALEDALSTGSPIRTEVDQLRKSLEGIDKDSLLELALSSIPEDVLEYGSDTPMDLKQ 512
           LG LAL+D LS G P++ E+D L+  LEG  KDS+L L LSS+PE+    G+DT + L Q
Sbjct: 479 LGALALDDTLSKGLPVQKEIDTLQTYLEGTHKDSILGLVLSSLPEEARSNGTDTVLQLNQ 538

Query: 513 KFNSLKETVRHFSLIPAGGVGMLTHAVAHVASSIKIKE-DQSGDGIESLLNRVENLIIHG 571
           KF++LK T+RHFSLIP GG G+L H++AHVASS+K KE DQ+  GIES++ +V+N +  G
Sbjct: 539 KFDTLKGTLRHFSLIPPGGGGILAHSLAHVASSLKFKEVDQANGGIESVIKKVDNYLAEG 598

Query: 572 DLSAAAEALERGLQGSEAAEIASEWVKQARKRAIAEQTLTLLHSYASSITFS 623
            L+ AA  LE G++GS+A EI S+WV++AR RAI EQ LTLL SYA+ ++ +
Sbjct: 599 KLAEAAATLEEGVKGSKAEEIVSDWVRRARNRAITEQALTLLQSYATCVSLT 650



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.308    0.126    0.342 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,533,618
Number of extensions: 480535
Number of successful extensions: 1507
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1506
Number of HSP's successfully gapped: 2
Length of query: 623
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 518
Effective length of database: 8,227,889
Effective search space: 4262046502
Effective search space used: 4262046502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 115 (48.9 bits)