Os04g0628300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Harpin-induced 1 domain containing protein.
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Os04g0628300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Harpin-induced 1 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 423.25 | 0.967 | 3.08 | -0.146 | 0.179 | 3.36 | 0.283 | -8.6 | -0.289 | 1.54 | 82.15 | 70 | 8.18 | 0.695 |
| 440.36 | 0.977 | 3.08 | -0.203 | 0.19 | 3 | 0.645 | -- | -0.275 | 0.155 | 81.65 | 70 | 8.18 | 0.697 |
| 422.95 | 0.958 | 3.09 | -0.15 | 0.19 | 3.55 | -- | -9.37 | -0.287 | 2.35 | 83.01 | 70 | 8.15 | 0.685 |
| 440.88 | 0.978 | 3.07 | -0.156 | 0.159 | 2.83 | -- | -- | -0.274 | 2.36 | 80.34 | 70 | 8.18 | 0.683 |
| 424.93 | 0.96 | 3.08 | -0.154 | -- | 3.59 | -- | -9.74 | -0.289 | -- | 83.45 | 70 | 8.16 | 0.692 |
| 465.6 | 1.01 | 3.09 | -0.183 | 0.126 | -- | -0.977 | -- | -0.348 | 7.75 | -- | -- | -- | -- |
| 467.37 | 1.01 | 3.09 | -0.213 | 0.186 | -- | -- | -- | -0.35 | 4.89 | -- | -- | -- | -- |
| 442.84 | 0.98 | 3.07 | -0.161 | -- | 2.86 | -- | -- | -0.275 | -- | 80.35 | 70 | 8.18 | 0.683 |
| 441.56 | 0.979 | 3.08 | -- | 0.18 | 2.83 | -- | -- | -0.276 | 2.51 | 80 | 70 | 8.18 | 0.667 |
| 469.19 | 1.01 | 3.1 | -0.206 | -- | -- | -- | -- | -0.345 | -- | -- | -- | -- | -- |
| 468.56 | 1.01 | 3.09 | -- | 0.182 | -- | -- | -- | -0.326 | 4.92 | -- | -- | -- | -- |
| 443.52 | 0.981 | 3.08 | -- | -- | 2.78 | -- | -- | -0.277 | -- | 80 | 70 | 8.18 | 0.667 |
| 470.31 | 1.01 | 3.09 | -- | -- | -- | -- | -- | -0.322 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 428.50 | humidity | 80 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 2 | 434.33 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 9 | 1 |
| 13 | 434.62 | wind | 3 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 14 | 434.66 | wind | 5 | 10 | > th | dose independent | rect. | 10 | 1 |
| 22 | 435.03 | radiation | 20 | 30 | > th | dose dependent | rect. | 16 | 16 |
| 23 | 435.27 | wind | 7 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 40 | 435.48 | radiation | 20 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 57 | 436.17 | radiation | 20 | 10 | > th | dose independent | rect. | 16 | 17 |
| 62 | 436.88 | radiation | 20 | 30 | > th | dose independent | rect. | 7 | 1 |
| 97 | 437.24 | humidity | 90 | 90 | > th | dose independent | rect. | 8 | 1 |
| 106 | 437.44 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 5 | 10 |
| 115 | 437.52 | atmosphere | 1005 | 30 | < th | dose independent | rect. | 6 | 5 |
| 142 | 438.62 | radiation | 20 | 10 | < th | dose independent | sin | 11 | NA |
| 147 | 438.87 | radiation | 20 | 30 | > th | dose independent | sin | 11 | NA |
| 149 | 438.96 | wind | 9 | 90 | > th | dose dependent | rect. | 21 | 13 |
| 150 | 438.97 | wind | 9 | 90 | > th | dose dependent | rect. | 19 | 15 |
| 203 | 440.05 | temperature | 25 | 30 | > th | dose independent | rect. | 7 | 1 |
| 243 | 440.29 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 244 | 440.48 | wind | 9 | 10 | > th | dose independent | rect. | 15 | 1 |
| 252 | 440.48 | wind | 9 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 262 | 440.60 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 13 | 20 |
| 276 | 441.09 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 4 | 23 |
| 297 | 441.35 | temperature | 25 | 30 | > th | dose dependent | rect. | 5 | 3 |
| 299 | 441.39 | atmosphere | 1005 | 10 | > th | dose independent | sin | 3 | NA |
| 311 | 441.68 | temperature | 30 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 337 | 441.82 | temperature | 25 | 30 | > th | dose dependent | rect. | 24 | 8 |
| 388 | 442.43 | wind | 1 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 391 | 442.45 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 5 | 14 |
| 394 | 442.60 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 23 | 23 |
| 398 | 442.75 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 5 | 20 |
| 399 | 442.75 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 4 | 11 |
| 435 | 442.99 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 15 | 13 |
| 461 | 443.30 | temperature | 25 | 30 | > th | dose dependent | rect. | 22 | 10 |
| 467 | 443.37 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 16 | 17 |
| 468 | 443.38 | wind | 9 | 30 | > th | dose dependent | rect. | 15 | 11 |
| 486 | 443.39 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 490 | 443.46 | wind | 9 | 30 | > th | dose dependent | rect. | 15 | 7 |
| 526 | 443.67 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 1 | 14 |
| 530 | 443.79 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 5 | 13 |
| 592 | 444.39 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 10 |
| 619 | 444.45 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 7 |
| 625 | 444.51 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 3 |
| 654 | 444.55 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 4 | 23 |
| 680 | 444.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 12 |
| 717 | 444.72 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 16 |
| 726 | 444.77 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 16 | 23 |
| 739 | 444.94 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 5 | 17 |
| 741 | 444.96 | radiation | 10 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 747 | 445.00 | atmosphere | 1010 | 720 | < th | dose dependent | rect. | 20 | 13 |
| 749 | 445.02 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 16 | 23 |
| 753 | 445.09 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 21 | 22 |
| 771 | 445.21 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 5 | 3 |
| 778 | 445.28 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 10 | 23 |
| 796 | 445.31 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 8 | 23 |
| 804 | 445.39 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 4 | 14 |
| 805 | 445.40 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 3 |
| 838 | 445.55 | temperature | 30 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 849 | 445.60 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 850 | 445.60 | humidity | 70 | 10 | < th | dose independent | rect. | 15 | 17 |
| 876 | 445.69 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 4 | 14 |
| 889 | 445.79 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 942 | 445.92 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 19 |
| 949 | 445.94 | wind | 1 | 90 | < th | dose independent | rect. | 8 | 1 |
| 966 | 446.03 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 975 | 446.10 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 3 |
| 996 | 446.15 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 10 | 23 |