BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0628300 Os04g0628300|Os04g0628300
         (222 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0628300  Harpin-induced 1 domain containing protein          336   1e-92

>Os04g0628300 Harpin-induced 1 domain containing protein
          Length = 222

 Score =  336 bits (861), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 173/222 (77%), Positives = 173/222 (77%)

Query: 1   MSSQPPTATAGFIAGGRIRRPLPRERPHLTRCTKXXXXXXXXXXXXXXXXXXXXXXXXRP 60
           MSSQPPTATAGFIAGGRIRRPLPRERPHLTRCTK                        RP
Sbjct: 1   MSSQPPTATAGFIAGGRIRRPLPRERPHLTRCTKLLCSWFLSLLLVAGVLLFVVYLVVRP 60

Query: 61  HRPRFHVAAFTAAGVQSGGGPVALSGQLTIHNPNHDLAFFFGRVYMSVQYRGDGEVVVDG 120
           HRPRFHVAAFTAAGVQSGGGPVALSGQLTIHNPNHDLAFFFGRVYMSVQYRGDGEVVVDG
Sbjct: 61  HRPRFHVAAFTAAGVQSGGGPVALSGQLTIHNPNHDLAFFFGRVYMSVQYRGDGEVVVDG 120

Query: 121 KDLTGGPLYEPPRGTSAVGFEGVAVPXXXXXXXXXXXXXXXXXXXXXXXXXFTVKVRSRI 180
           KDLTGGPLYEPPRGTSAVGFEGVAVP                         FTVKVRSRI
Sbjct: 121 KDLTGGPLYEPPRGTSAVGFEGVAVPAGAATDMMARDAAAAAAGGGGGGVAFTVKVRSRI 180

Query: 181 RVRVAFWGSHWHPVHATCDVVVGPDGQLLPEFQQKRCGIDFF 222
           RVRVAFWGSHWHPVHATCDVVVGPDGQLLPEFQQKRCGIDFF
Sbjct: 181 RVRVAFWGSHWHPVHATCDVVVGPDGQLLPEFQQKRCGIDFF 222



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.142    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,493,398
Number of extensions: 274612
Number of successful extensions: 942
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 940
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 125
Effective length of database: 11,971,043
Effective search space: 1496380375
Effective search space used: 1496380375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 154 (63.9 bits)