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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0625100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.93 (0.0295) R2 : 0.0087
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.124 (0.0622) R2dN8 : 0.0112 R2N8 : 0.0087
σ : 0.556
deviance : 142
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
117.06 0.508 3.92 0.134 0.428 0.977 -0.883 1.98 0.0578 6.55 11.56 7 -- --
118.05 0.506 3.95 -0.121 0.474 0.892 -0.994 -- -0.015 5.96 22.62 2 -- --
118.77 0.508 3.92 0.125 0.437 1.06 -- 2.13 0.0535 6.14 10.48 2 -- --
120.4 0.511 3.95 -0.128 0.481 0.925 -- -- -0.0105 5.97 22.94 2 -- --
127.85 0.527 3.92 0.16 -- 0.824 -- 1.99 0.0893 -- 13.77 2 -- --
133.09 0.541 3.92 0.0603 0.367 -- -0.681 -- 0.125 8.18 -- -- -- --
133.96 0.542 3.92 0.0446 0.371 -- -- -- 0.127 9.19 -- -- -- --
130.39 0.532 3.96 -0.0952 -- 0.714 -- -- 0.014 -- 19.7 2 -- --
120.81 0.512 3.94 -- 0.473 0.888 -- -- 0.00986 6.07 23.1 2 -- --
141.95 0.557 3.93 0.0434 -- -- -- -- 0.129 -- -- -- -- --
134.01 0.542 3.92 -- 0.371 -- -- -- 0.122 9.18 -- -- -- --
130.62 0.532 3.95 -- -- 0.692 -- -- 0.0276 -- 19.7 2 -- --
142 0.556 3.93 -- -- -- -- -- 0.124 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 111.04 atmosphere 1000 90 < th dose dependent rect. 4 3
2 111.17 atmosphere 1000 90 < th dose independent rect. 4 3
3 111.53 atmosphere 1000 10 < th dose independent rect. 4 3
4 111.53 atmosphere 1000 10 < th dose dependent rect. 4 3
7 111.58 atmosphere 1000 90 < th dose independent rect. 4 1
10 111.58 atmosphere 1000 90 < th dose dependent rect. 4 1
31 114.14 temperature 10 10 > th dose dependent rect. 23 23
35 114.61 temperature 20 720 > th dose dependent rect. 23 12
36 114.80 temperature 20 720 > th dose dependent sin 6 NA
38 114.92 temperature 15 720 > th dose dependent rect. 23 18
46 115.26 temperature 20 720 > th dose dependent rect. 1 10
47 115.26 temperature 10 720 > th dose dependent rect. 21 20
55 115.42 temperature 20 30 > th dose dependent rect. 5 17
71 115.65 temperature 20 10 > th dose dependent rect. 1 21
120 116.13 temperature 10 270 > th dose dependent rect. 1 23
148 116.38 temperature 20 10 > th dose dependent rect. 1 23
181 116.60 temperature 25 4320 < th dose independent rect. 20 8
199 116.72 temperature 25 4320 > th dose independent rect. 21 6
221 116.79 temperature 10 270 > th dose dependent rect. 4 23
231 116.84 temperature 25 4320 < th dose independent rect. 22 4
242 116.87 temperature 20 10 > th dose dependent rect. 7 15
255 116.90 temperature 20 10 > th dose dependent rect. 5 23
289 117.01 temperature 15 270 > th dose dependent rect. 13 23
311 117.14 temperature 10 10 > th dose dependent no NA NA
314 117.15 temperature 25 4320 < th dose independent rect. 23 2
317 117.15 temperature 30 10 < th dose dependent rect. 3 23
369 117.35 temperature 30 270 < th dose dependent rect. 21 23
399 117.46 temperature 30 10 < th dose dependent rect. 9 23
463 117.63 temperature 30 10 < th dose dependent no NA NA
469 117.64 temperature 30 10 < th dose dependent rect. 17 23
482 117.67 temperature 30 10 < th dose dependent rect. 21 23
486 117.68 temperature 30 10 < th dose dependent rect. 13 23
493 117.70 temperature 30 10 < th dose dependent rect. 15 23
500 117.72 temperature 30 10 < th dose dependent rect. 11 23
513 117.75 temperature 30 270 < th dose dependent rect. 24 23
543 117.82 temperature 25 90 > th dose independent rect. 1 20
551 117.85 temperature 20 4320 > th dose dependent rect. 24 1
555 117.85 temperature 30 10 < th dose dependent rect. 7 23
584 117.92 temperature 20 10 > th dose dependent rect. 7 23
594 117.95 temperature 20 10 > th dose dependent rect. 21 23
631 118.03 temperature 30 10 < th dose dependent rect. 1 23
647 118.08 temperature 25 4320 < th dose dependent rect. 21 1
655 118.09 temperature 30 10 < th dose dependent rect. 19 23
662 118.10 temperature 20 10 > th dose dependent rect. 15 23
674 118.12 temperature 30 270 < th dose dependent rect. 11 23
693 118.15 temperature 30 270 < th dose dependent rect. 9 23
694 118.16 temperature 25 4320 < th dose independent sin 12 NA
706 118.19 temperature 25 90 > th dose independent rect. 6 15
764 118.30 temperature 25 4320 < th dose independent rect. 20 1
807 118.37 temperature 20 10 > th dose dependent rect. 13 23
809 118.37 temperature 30 270 < th dose dependent rect. 6 23
851 118.45 temperature 15 4320 > th dose dependent rect. 21 1
852 118.45 temperature 30 1440 < th dose dependent rect. 17 2
869 118.47 temperature 25 4320 > th dose independent sin 12 NA
870 118.47 temperature 25 4320 > th dose independent rect. 20 1
900 118.52 temperature 20 720 > th dose independent rect. 19 16
922 118.55 temperature 20 720 > th dose independent rect. 5 16
930 118.56 temperature 20 720 > th dose independent sin 23 NA
932 118.56 temperature 10 4320 > th dose dependent rect. 20 6
934 118.56 temperature 30 4320 < th dose dependent rect. 20 6
1000 118.64 wind 9 43200 > th dose dependent rect. 18 12