BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0625100 Os04g0625100|AK064614
         (627 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0625100  Conserved hypothetical protein                     1070   0.0  
Os12g0145300                                                       83   6e-16
Os11g0448900                                                       82   1e-15

>Os04g0625100 Conserved hypothetical protein
          Length = 627

 Score = 1070 bits (2768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 533/627 (85%), Positives = 533/627 (85%)

Query: 1   MDFTAPSFSLGSEFDEPEEAVGYTAPDAPSFSLGIDFEGDGDESHLTDAGNGGEEQKRYE 60
           MDFTAPSFSLGSEFDEPEEAVGYTAPDAPSFSLGIDFEGDGDESHLTDAGNGGEEQKRYE
Sbjct: 1   MDFTAPSFSLGSEFDEPEEAVGYTAPDAPSFSLGIDFEGDGDESHLTDAGNGGEEQKRYE 60

Query: 61  APDAPSFSVGIDXXXXXXXXXXXXXXXXXXXAPDAPSFSLXXXXXXXXXXEPHLTNGGHR 120
           APDAPSFSVGID                   APDAPSFSL          EPHLTNGGHR
Sbjct: 61  APDAPSFSVGIDSGSDGGEERRREEQRRSYEAPDAPSFSLGIDSDGDGGDEPHLTNGGHR 120

Query: 121 EEQQRRYEAPDAPSFSLGIDFGDGDDEPRLPNASRQAPRYEAPDAPSFSLGFDDDEDDVL 180
           EEQQRRYEAPDAPSFSLGIDFGDGDDEPRLPNASRQAPRYEAPDAPSFSLGFDDDEDDVL
Sbjct: 121 EEQQRRYEAPDAPSFSLGIDFGDGDDEPRLPNASRQAPRYEAPDAPSFSLGFDDDEDDVL 180

Query: 181 IGGSRHELGTVEEEDDDFVLADGQQQQQRRHETVVXXXXXXXXEMNRFKRLRRGXXXXXX 240
           IGGSRHELGTVEEEDDDFVLADGQQQQQRRHETVV        EMNRFKRLRRG      
Sbjct: 181 IGGSRHELGTVEEEDDDFVLADGQQQQQRRHETVVPDPAPPPPEMNRFKRLRRGPAPPSQ 240

Query: 241 XXXXXXXXXXXXXXMEASPVVSSKAVLGDIGSXXXXXXXXXXXXXXMRDVPPSVGSCITX 300
                         MEASPVVSSKAVLGDIGS              MRDVPPSVGSCIT 
Sbjct: 241 APTPPPHRTPAPATMEASPVVSSKAVLGDIGSFEDEIEDFTDEERFMRDVPPSVGSCITS 300

Query: 301 XXXXXXXXXXXXXXLMNHGVLMSQSTSKSKKFAQTPNYSASKSMEESSTKKLLPKTALSP 360
                         LMNHGVLMSQSTSKSKKFAQTPNYSASKSMEESSTKKLLPKTALSP
Sbjct: 301 SSSRFSHASNSKFSLMNHGVLMSQSTSKSKKFAQTPNYSASKSMEESSTKKLLPKTALSP 360

Query: 361 MRKIHLLXXXXXXXXNKEMPGLQQNCKSKVSTVQHKGKAEMNDSWATPALDEFCNEYFKS 420
           MRKIHLL        NKEMPGLQQNCKSKVSTVQHKGKAEMNDSWATPALDEFCNEYFKS
Sbjct: 361 MRKIHLLDSDSDSDDNKEMPGLQQNCKSKVSTVQHKGKAEMNDSWATPALDEFCNEYFKS 420

Query: 421 VEDSRPSQQKEGNSFCGPKVIRSNYSVSETGGHFPHQSTPSGAVLEDNQTDSHPPAMHYF 480
           VEDSRPSQQKEGNSFCGPKVIRSNYSVSETGGHFPHQSTPSGAVLEDNQTDSHPPAMHYF
Sbjct: 421 VEDSRPSQQKEGNSFCGPKVIRSNYSVSETGGHFPHQSTPSGAVLEDNQTDSHPPAMHYF 480

Query: 481 FHHDQLVRDLVRQRLKHFVPVGVDSRGNEQDGTQNLQYRSQTGRCAAENDRWVTPNKRMP 540
           FHHDQLVRDLVRQRLKHFVPVGVDSRGNEQDGTQNLQYRSQTGRCAAENDRWVTPNKRMP
Sbjct: 481 FHHDQLVRDLVRQRLKHFVPVGVDSRGNEQDGTQNLQYRSQTGRCAAENDRWVTPNKRMP 540

Query: 541 VATQVGRRRVNPAGMSGSGHWLTGDDGKKVYISKDGQELTGRVAYRQYQRESGKGFRQSK 600
           VATQVGRRRVNPAGMSGSGHWLTGDDGKKVYISKDGQELTGRVAYRQYQRESGKGFRQSK
Sbjct: 541 VATQVGRRRVNPAGMSGSGHWLTGDDGKKVYISKDGQELTGRVAYRQYQRESGKGFRQSK 600

Query: 601 KKSSAGTRAKKATTKVKQEKTRAKRKR 627
           KKSSAGTRAKKATTKVKQEKTRAKRKR
Sbjct: 601 KKSSAGTRAKKATTKVKQEKTRAKRKR 627



>Os12g0145300 
          Length = 221

 Score = 83.2 bits (204), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 44/66 (66%)

Query: 35  IDFEGDGDESHLTDAGNGGEEQKRYEAPDAPSFSVGIDXXXXXXXXXXXXXXXXXXXAPD 94
           IDFEGDGDESHLTD GNGGEEQKRYEAPDAPSF +GID                   AP+
Sbjct: 68  IDFEGDGDESHLTDGGNGGEEQKRYEAPDAPSFFLGIDSDSDGDKERRREEQRRSYEAPN 127

Query: 95  APSFSL 100
            PSFSL
Sbjct: 128 VPSFSL 133



>Os11g0448900 
          Length = 104

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/56 (71%), Positives = 44/56 (78%)

Query: 17 PEEAVGYTAPDAPSFSLGIDFEGDGDESHLTDAGNGGEEQKRYEAPDAPSFSVGID 72
          P  ++   +    SFSLGIDFEGDGDESHLTD GNGGEEQKRYEA DAPSFS+ ID
Sbjct: 38 PNPSIAVASRWTSSFSLGIDFEGDGDESHLTDNGNGGEEQKRYEALDAPSFSLDID 93



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.129    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,475,812
Number of extensions: 986589
Number of successful extensions: 2086
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2050
Number of HSP's successfully gapped: 4
Length of query: 627
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 520
Effective length of database: 11,448,903
Effective search space: 5953429560
Effective search space used: 5953429560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 159 (65.9 bits)