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Os04g0624600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Starch synthase DULL1 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.5 (0.0319) R2 : 0.863
β1 : -1.43 (0.117) R2dD : 0.0463 R2D : 0.0341
β2 : 3.51 (0.089) R2dC : 0.603 R2C : 0.737
β3 : -0.986 (0.0996) R2dE : 0.0422 R2E : 0.201
β4 : 2.45 (0.313) R2dD*C : 0.0184 R2D*C : 0.0108
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.493 (0.0693) R2dN8 : 0.0215 R2N8 : 0.0106
σ : 0.6
deviance : 163.25
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C
peak time of C : 9.4
E
wheather : temperature
threshold : 25.61
memory length : 70
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16.2
open length of G : 6.05

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
152.13 0.58 12.4 -1.02 3.43 -1.17 2.82 3.78 -0.366 9.39 25.61 70 16.2 6.05
163.25 0.6 12.5 -1.43 3.51 -0.986 2.45 -- -0.493 9.4 25.61 70 16.2 6.05
179.66 0.624 12.4 -0.947 3.4 -1.23 -- 2.9 -0.338 9.47 25.63 74 16.1 5.93
181.2 0.627 12.5 -1.33 3.38 -1.05 -- -- -0.517 9.42 24.72 54 16.2 6.18
323.88 0.838 12.6 -1.29 -- -2.55 -- -1.5 -0.571 -- 17.6 27 16.5 10.3
195.58 0.656 12.5 -1.52 3.95 -- 2.65 -- -0.643 9.08 -- -- -- --
220.11 0.695 12.5 -1.42 3.94 -- -- -- -0.641 9.09 -- -- -- --
269.37 0.764 12.6 -1.05 -- -2.83 -- -- -0.705 -- 14.3 208 14.1 11.7
226.32 0.701 12.5 -- 3.44 -1.03 -- -- -0.418 9.44 24.71 54 16 6.38
1113.5 1.56 12.6 -1.43 -- -- -- -- -0.618 -- -- -- -- --
273.55 0.774 12.5 -- 3.93 -- -- -- -0.482 9.11 -- -- -- --
265.27 0.759 12.6 -- -- -3.74 -- -- -0.425 -- 2.663 487 11.4 11
1167.64 1.59 12.6 -- -- -- -- -- -0.459 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 155.37 temperature 25.0 90 > th dose independent rect. 16 6
2 156.15 temperature 25.0 270 > th dose dependent rect. 16 4
5 157.35 temperature 25.0 10 > th dose independent rect. 16 6
7 157.55 temperature 25.0 270 > th dose independent rect. 16 3
36 161.08 temperature 20.0 10 > th dose dependent rect. 16 7
44 161.69 temperature 25.0 10 > th dose dependent rect. 18 4
60 162.24 radiation 10.0 10 < th dose independent rect. 7 14
61 162.33 radiation 20.0 90 < th dose dependent rect. 7 14
62 162.37 atmosphere 1000.0 270 > th dose independent rect. 16 3
66 162.48 temperature 25.0 90 > th dose dependent rect. 16 13
70 162.63 wind 7.0 270 < th dose independent rect. 16 3
79 162.79 radiation 20.0 10 < th dose dependent rect. 7 14
85 162.95 atmosphere 1000.0 270 > th dose independent rect. 15 5
92 163.25 radiation 10.0 270 > th dose independent rect. 6 9
110 163.29 radiation 10.0 270 > th dose independent rect. 8 7
114 163.34 temperature 10.0 10 > th dose dependent rect. 23 17
129 163.56 atmosphere 1000.0 30 > th dose independent rect. 16 18
153 163.89 radiation 10.0 90 < th dose independent rect. 7 14
160 164.04 radiation 30.0 270 < th dose independent rect. 15 4
163 164.06 precipitation 0.1 270 < th dose independent rect. 19 20
164 164.06 radiation 10.0 90 < th dose dependent rect. 5 16
165 164.06 precipitation 0.1 270 < th dose dependent rect. 19 20
178 164.26 temperature 15.0 270 > th dose independent rect. 19 20
193 164.53 temperature 10.0 270 > th dose independent rect. 15 4
195 164.53 atmosphere 1010.0 270 < th dose independent rect. 15 4
200 164.56 humidity 80.0 10 < th dose independent rect. 10 6
204 164.62 wind 9.0 270 < th dose independent rect. 19 20
207 164.65 temperature 10.0 90 > th dose dependent rect. 21 19
217 164.72 humidity 90.0 30 < th dose dependent rect. 23 17
242 164.90 wind 1.0 270 > th dose independent rect. 15 4
244 164.92 radiation 40.0 30 < th dose dependent rect. 16 18
265 165.05 atmosphere 995.0 270 > th dose dependent rect. 16 3
281 165.28 atmosphere 1000.0 10 > th dose independent rect. 16 6
306 165.57 atmosphere 995.0 270 > th dose dependent rect. 15 5
309 165.59 wind 9.0 90 < th dose dependent rect. 16 5
314 165.60 atmosphere 995.0 270 > th dose independent rect. 20 18
321 165.69 precipitation 0.1 270 < th dose independent rect. 15 4
322 165.69 precipitation 0.1 270 < th dose dependent rect. 15 4
324 165.71 temperature 25.0 10 > th dose dependent rect. 18 11
328 165.75 atmosphere 995.0 270 > th dose independent rect. 19 20
329 165.75 atmosphere 1015.0 270 < th dose independent rect. 19 20
339 165.81 radiation 20.0 10 < th dose dependent rect. 9 12
345 165.89 humidity 90.0 270 < th dose independent rect. 8 7
353 166.02 humidity 90.0 30 < th dose dependent rect. 10 6
374 166.20 radiation 10.0 1440 < th dose dependent rect. 22 7
394 166.32 radiation 40.0 90 < th dose dependent rect. 15 6
431 166.53 humidity 90.0 30 < th dose dependent rect. 8 8
440 166.62 wind 9.0 270 < th dose dependent rect. 16 3
445 166.66 humidity 90.0 30 < th dose dependent rect. 6 10
467 166.76 atmosphere 995.0 10 > th dose dependent rect. 16 6
470 166.80 humidity 90.0 270 < th dose independent rect. 16 3
480 166.90 atmosphere 1000.0 270 > th dose independent rect. 15 17
483 166.91 humidity 90.0 270 < th dose independent rect. 6 9
491 166.98 radiation 10.0 90 < th dose dependent sin 23 NA
505 167.13 radiation 10.0 10 < th dose independent rect. 14 7
565 167.44 radiation 10.0 270 < th dose dependent sin 2 NA
587 167.57 wind 9.0 270 < th dose independent rect. 4 15
594 167.61 wind 1.0 10 > th dose independent rect. 16 6
604 167.67 radiation 10.0 10 < th dose dependent sin 22 NA
627 167.78 atmosphere 1000.0 10 > th dose independent rect. 18 16
628 167.79 precipitation 0.1 10 < th dose independent rect. 16 6
629 167.79 precipitation 0.1 10 < th dose dependent rect. 16 6
642 167.87 temperature 30.0 270 < th dose dependent rect. 1 8
662 167.95 temperature 15.0 270 > th dose independent rect. 8 7
674 168.02 atmosphere 1015.0 10 < th dose independent rect. 22 18
684 168.06 wind 1.0 90 > th dose independent rect. 4 17
704 168.14 atmosphere 995.0 270 > th dose independent rect. 3 16
705 168.15 humidity 80.0 10 < th dose independent rect. 10 8
716 168.17 radiation 40.0 10 < th dose dependent rect. 16 5
768 168.34 radiation 10.0 270 < th dose independent rect. 1 18
788 168.40 radiation 30.0 90 < th dose dependent rect. 24 23
808 168.46 radiation 20.0 270 < th dose dependent rect. 1 18
819 168.51 temperature 25.0 270 > th dose dependent sin 14 NA
830 168.57 wind 9.0 270 < th dose independent rect. 19 9
859 168.63 radiation 30.0 90 < th dose dependent rect. 1 20
860 168.64 temperature 10.0 270 > th dose independent rect. 19 9
861 168.64 temperature 30.0 270 < th dose independent rect. 19 9
862 168.64 humidity 50.0 270 > th dose independent rect. 19 9
863 168.64 atmosphere 995.0 270 > th dose independent rect. 19 9
864 168.64 radiation 1.0 270 < th dose independent rect. 19 9
869 168.64 temperature 10.0 270 > th dose independent rect. 4 15
870 168.64 atmosphere 1015.0 270 < th dose independent rect. 4 15
872 168.64 radiation 1.0 270 < th dose dependent rect. 19 9
883 168.66 humidity 70.0 270 > th dose independent rect. 19 9
958 168.88 wind 9.0 270 < th dose independent rect. 15 17
967 168.92 precipitation 0.1 270 < th dose independent rect. 19 9
970 168.92 precipitation 0.1 270 < th dose dependent rect. 19 9
976 168.94 radiation 10.0 270 > th dose independent rect. 16 1
987 168.97 radiation 10.0 10 > th dose independent sin 20 NA