BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0624600 Os04g0624600|AK122098
(1216 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G11720.2 | chr1:3951597-3956840 FORWARD LENGTH=1095 1174 0.0
AT4G18240.1 | chr4:10082221-10087044 FORWARD LENGTH=1041 389 e-108
AT3G01180.1 | chr3:62456-65678 REVERSE LENGTH=793 198 2e-50
AT5G24300.1 | chr5:8266934-8270860 FORWARD LENGTH=653 178 2e-44
AT1G32900.1 | chr1:11920582-11923506 REVERSE LENGTH=611 164 2e-40
AT5G65685.1 | chr5:26273252-26275864 REVERSE LENGTH=461 114 3e-25
>AT1G11720.2 | chr1:3951597-3956840 FORWARD LENGTH=1095
Length = 1094
Score = 1174 bits (3037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 576/1064 (54%), Positives = 729/1064 (68%), Gaps = 42/1064 (3%)
Query: 187 TSVSSTHVQDRSIVGFHEQEKSV-VSFHEQDRSIVSVPEQSQP------SSGVSGQNPTE 239
+S++S Q +S H+ S S +Q R S P+ S P ++ S Q T+
Sbjct: 38 SSIASLESQYKSNGFLHQITASADFSRKKQGRMAASGPKSSGPRGFGRRTTVGSAQKRTQ 97
Query: 240 EKTIISGQDVTEEAPEEITGKSIEREPLSRETEKVLFADDDPRIIKDEQYEPDIAPVQDD 299
+K + T A E++G I + P ++ + ++ +E+ D + ++D
Sbjct: 98 KKNGEKDSNATSTATNEVSG--ISKLPAAK-----VDVQKQSSVVLNERNVLDRSDIEDG 150
Query: 300 VD---------------------PQVLRRRLEELAEKNYLAGNKCFVFPEVVQADSVIDL 338
D + R+ +E LA +N G++ FV+P +V+ D I++
Sbjct: 151 SDRLDKKTTDDDDLLEQKLKLERENLRRKEIETLAAENLARGDRMFVYPVIVKPDEDIEV 210
Query: 339 YLNHSMSALASEPDILIKGAFNGWRWKKFTQKMHKSELTGDWWCCKLHIPKQAYRLDFVF 398
+LN ++S L +EPD+LI GAFN WRWK FT+++ K+ + DW C LHIPK+AY++DFVF
Sbjct: 211 FLNRNLSTLNNEPDVLIMGAFNEWRWKSFTRRLEKTWIHEDWLSCLLHIPKEAYKMDFVF 270
Query: 399 FNGDTIYENNNHNDFVLQIESEINEHSFEDFLVXXXXXXXXXXXXXXXXXXXXXXXXXXX 458
FNG ++Y+NN+ DF ++I+ +++ FE+FL+
Sbjct: 271 FNGQSVYDNNDSKDFCVEIKGGMDKVDFENFLLEEKLREQEKLAKEEAERERQKEEKRRI 330
Query: 459 XXXXXXXXXXXXXXXXXVEMNKNKLQNLLNSASRYADNLWYIEPHTYKAGDRVKLFYNRS 518
+ + LQ + A A+N+WYIEP +KA D VKL+YN+
Sbjct: 331 EAQKAAIEADRAQAKAETQKRRELLQPAIKKAVVSAENVWYIEPSDFKAEDTVKLYYNKR 390
Query: 519 SRPLMHNTEIWMHGGYNNWSDGLSIAEKLIKSYEKD-----GDWWYADVTLPEGALVLDW 573
S PL ++ E+W+HGG+NNW DGLSI KL+ + KD G+WW+A+V +P GALV+DW
Sbjct: 391 SGPLTNSKELWLHGGFNNWVDGLSIVVKLVNAELKDVDPKSGNWWFAEVVVPGGALVIDW 450
Query: 574 VFADGPPGNARNYDNNGRQDFHAVVPNNISEDLFWVEEEHMIFKRLQXXXXXXXXXXXXX 633
VFADGPP A YDNNG QDFHA+VP + E+L+W+EEE+MIF++LQ
Sbjct: 451 VFADGPPKGAFLYDNNGYQDFHALVPQKLPEELYWLEEENMIFRKLQEDRRLKEEVMRAK 510
Query: 634 XXIXXXXXXXXXXXXXRDFLLSQKHIVYTEPLEVRAGTTVDVLYNPSNTVLNGKPEVWFR 693
+ FLLSQK +VYTEPLE++AG V VLYNP+NTVLNGKPEVWFR
Sbjct: 511 MEKTARLKAETKERTLKKFLLSQKDVVYTEPLEIQAGNPVTVLYNPANTVLNGKPEVWFR 570
Query: 694 CSFNRWTHPSGPLPPQKM-VNAENGSHLRATVRVPLDAYMMDFVFSESEEGGIYDNRNGM 752
SFNRWTH GPLPPQKM + SH++ T +VPLDAYMMDFVFSE E+GGI+DN+NG+
Sbjct: 571 GSFNRWTHRLGPLPPQKMEATDDESSHVKTTAKVPLDAYMMDFVFSEKEDGGIFDNKNGL 630
Query: 753 DYHSPVTDSVAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKYD 812
DYH PV ++KEPP+HIVHIAVEMAPIAKVGGLGDVVTSLSRAVQ+L HNV+++ PKYD
Sbjct: 631 DYHLPVVGGISKEPPLHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQELNHNVDIVFPKYD 690
Query: 813 CLNLSNVKDLHYRQSFTWGNTEIKVWFGKVEDVPVYFLEPQNGMFWVGCVYG-RNDESRF 871
C+ + VKDL + +S+ WG TEIKVW GKVE + VYFL+PQNG+F GCVYG +D RF
Sbjct: 691 CIKHNFVKDLQFNRSYHWGGTEIKVWHGKVEGLSVYFLDPQNGLFQRGCVYGCADDAGRF 750
Query: 872 GFFCHSALEFLRQNGSSPDIIHCHDWSSAPVAWLFKEQYAQNGLSNGRVVFTIHNLEFGA 931
GFFCH+ALEFL Q G PDI+HCHDWSSAPV+WLFK+ Y Q GL R+VFTIHNLEFGA
Sbjct: 751 GFFCHAALEFLLQGGFHPDILHCHDWSSAPVSWLFKDHYTQYGLIKTRIVFTIHNLEFGA 810
Query: 932 HHIGKAMARCDKATTVSYTYSREVSGHGAIAPHFSKFHGIRNGIDPDIWDPYSDNFIPVH 991
+ IGKAM DKATTVS TY++EV+G+ I+ H KFHGI NGIDPDIWDPY+DNFIPV
Sbjct: 811 NAIGKAMTFADKATTVSPTYAKEVAGNSVISAHLYKFHGIINGIDPDIWDPYNDNFIPVP 870
Query: 992 YTSENVVEGKSAAKKALQQRLGLQQTDTPVVGIISRLTVQKGIHLIKHAIYRTLERNGQV 1051
YTSENVVEGK AAK+ LQ RLGL+ D PVVGII+RLT QKGIHLIKHAI+RTLERNGQV
Sbjct: 871 YTSENVVEGKRAAKEELQNRLGLKSADFPVVGIITRLTHQKGIHLIKHAIWRTLERNGQV 930
Query: 1052 VLLGSAPDHRIQGDFTNLASKLHGEYHGRVKLCLTYDEPLSHLIYAGADFILVPSMFEPC 1111
VLLGSAPD RIQ DF NLA++LH + R +L LTYDEPLSHLIYAGADFILVPS+FEPC
Sbjct: 931 VLLGSAPDPRIQNDFVNLANQLHSSHGDRARLVLTYDEPLSHLIYAGADFILVPSIFEPC 990
Query: 1112 GLTQLTAMRYGSIPIVRKTGGLYXXXXXXXXXXXRAREQGLEPNGFSFEGADSNGVDYAL 1171
GLTQL AMRYG++P+VRKTGGL+ RA+ Q LEPNGFSF+GAD+ GVDYAL
Sbjct: 991 GLTQLIAMRYGAVPVVRKTGGLFDTVFDVDHDKERAQAQVLEPNGFSFDGADAPGVDYAL 1050
Query: 1172 DRAITTWYDARDWFHSLCKRVMEQDWTWNRPALDYMELYHSARK 1215
+RAI+ WYD R+WF+SLCK VMEQDW+WNRPAL+Y+ELYHSARK
Sbjct: 1051 NRAISAWYDGREWFNSLCKTVMEQDWSWNRPALEYLELYHSARK 1094
>AT4G18240.1 | chr4:10082221-10087044 FORWARD LENGTH=1041
Length = 1040
Score = 389 bits (999), Expect = e-108, Method: Compositional matrix adjust.
Identities = 210/492 (42%), Positives = 281/492 (57%), Gaps = 56/492 (11%)
Query: 768 MHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKYDCLNLSNVKDLHYRQS 827
+++VHIA EMAP+AKVGGLGDVV L +A+Q GH VE+ILPKYDC+ V+DL +
Sbjct: 542 LYVVHIAAEMAPVAKVGGLGDVVAGLGKALQRKGHLVEIILPKYDCMQYDRVRDLRALDT 601
Query: 828 -----FTWGNTEIKVWFGKVEDVPVYFLEPQ--NGMFWVGCVYGRNDE-SRFGFFCHSAL 879
F + K+W G VE +PV+F+EPQ + FW G YG D+ RF +F +AL
Sbjct: 602 VVESYFDGKLYKNKIWIGTVEGLPVHFIEPQHPSKFFWRGQFYGEQDDFRRFSYFSRAAL 661
Query: 880 EFLRQNGSSPDIIHCHDWSSAPVAWLFKEQYAQNGLSNGRVVFTIHNLEFGAHHIGKAMA 939
E L Q+G PDIIHCHDW +A VA L+ + YA GL + R+ FT HN E+ +
Sbjct: 662 ELLLQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLDSARICFTCHNFEYQGTASASELG 721
Query: 940 RC--------------------------------DKATTVSYTYSREVSG-------HGA 960
C + TTVS TY++EV H
Sbjct: 722 SCGLDVNQLNRPDRMQDHSSGDRVNPVKGAIIFSNIVTTVSPTYAQEVRTAEGGKGLHST 781
Query: 961 IAPHFSKFHGIRNGIDPDIWDPYSDNFIPVHYTSENVVEGKSAAKKALQQRLGLQQTDT- 1019
+ H KF GI NGID D W+P +D F+ + ++++ +GK K AL+++LGL ++
Sbjct: 782 LNFHSKKFIGILNGIDTDSWNPATDPFLKAQFNAKDL-QGKEENKHALRKQLGLSSAESR 840
Query: 1020 -PVVGIISRLTVQKGIHLIKHAIYRTLERNGQVVLLGSAPDHRIQGDFTNLASKLHGEYH 1078
P+VG I+RL QKG+HLI+HAIYRTLE GQ VLLGS+P IQ +F + + H
Sbjct: 841 RPLVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVPHIQREFEGIEQQFKS--H 898
Query: 1079 GRVKLCLTYDEPLSHLIYAGADFILVPSMFEPCGLTQLTAMRYGSIPIVRKTGGLYXXXX 1138
V+L L YDE LSH IYA +D ++PS+FEPCGLTQ+ AMRYGSIPI RKTGGL
Sbjct: 899 DHVRLLLKYDEALSHTIYAASDLFIIPSIFEPCGLTQMIAMRYGSIPIARKTGGLNDSVF 958
Query: 1139 XXXXXXXRAREQGLEPNGFSFEGADSNGVDYALDRAITTWYDARDWFHSLCKRVMEQDWT 1198
+ Q NGF+F+ AD G +YAL+RA + + + L ++VM D++
Sbjct: 959 DIDDDTIPTQFQ----NGFTFQTADEQGFNYALERAFNHYKKDEEKWMRLVEKVMSIDFS 1014
Query: 1199 WNRPALDYMELY 1210
W A Y ELY
Sbjct: 1015 WGSSATQYEELY 1026
>AT3G01180.1 | chr3:62456-65678 REVERSE LENGTH=793
Length = 792
Score = 198 bits (503), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 149/520 (28%), Positives = 237/520 (45%), Gaps = 90/520 (17%)
Query: 764 KEPP------MHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKYDCLNLS 817
K PP M+++ +A E AP +K GGLGDV +L +++ GH V V++P+Y +
Sbjct: 291 KPPPLAGANVMNVILVAAECAPFSKTGGLGDVAGALPKSLARRGHRVMVVVPRY--AEYA 348
Query: 818 NVKDLHYRQSFTWGNTEIKVWF--GKVEDVPVYFLEPQNGMFWVGCVYGRNDE---SRFG 872
KDL R+ + +++V + ++ V F++ +YG N R
Sbjct: 349 EAKDLGVRKRYKVAGQDMEVMYFHAFIDGVDFVFIDSPEFRHLSNNIYGGNRLDILKRMV 408
Query: 873 FFCHSALEFLRQNGSSPDIIHC--------------HDWSSAPVAWLFKEQYAQNGLSN- 917
FC +A+E P + C +DW +A + K Y +G+
Sbjct: 409 LFCKAAVEV-------PWYVPCGGVCYGDGNLAFIANDWHTALLPVYLKAYYRDHGIMKY 461
Query: 918 GRVVFTIHNLE----------------------------FGAHHI---GKAMARCDKATT 946
R V IHN+ G H + D+ T
Sbjct: 462 TRSVLVIHNIAHQGRGPVDDFSYVDLPSHYLDSFKLYDPVGGEHFNIFAAGLKAADRVLT 521
Query: 947 VSYTYSREVSG-------HGAIAPHFSKFHGIRNGIDPDIWDPYSDNFIP----VHYTSE 995
VS+ YS EV H I + KF GI NGID W+P D ++ +Y+ E
Sbjct: 522 VSHGYSWEVKTLEGGWGLHNIINENDWKFRGIVNGIDTQEWNPEFDTYLHSDDYTNYSLE 581
Query: 996 NVVEGKSAAKKALQQRLGLQ-QTDTPVVGIISRLTVQKGIHLIKHAIYRTLERNGQVVLL 1054
N+ GK K ALQ+ LGL + D P++G I RL QKG+ LI A+ + ++ Q+V+L
Sbjct: 582 NLHIGKPQCKAALQKELGLPVRPDVPLIGFIGRLDHQKGVDLIAEAVPWMMSQDVQLVML 641
Query: 1055 GSAPDHRIQGDFTNLASKLHGEYHGRVKLCLTYDEPLSHLIYAGADFILVPSMFEPCGLT 1114
G+ + D + ++ +Y + + + + +H I AGAD +L+PS FEPCGL
Sbjct: 642 GTG-----RPDLEEVLRQMEHQYRDKARGWVGFSVKTAHRITAGADILLMPSRFEPCGLN 696
Query: 1115 QLTAMRYGSIPIVRKTGGLYXXXXXXXXXXXRAREQGLEPNGFSFEGADSNGVDYALDRA 1174
QL AM YG+IP+V GGL E GL G++F+ A++ + +AL
Sbjct: 697 QLYAMNYGTIPVVHAVGGLRDTVQQFDPYS----ETGL---GWTFDSAEAGKLIHALGNC 749
Query: 1175 ITTWYDARDWFHSLCKRVMEQDWTWNRPALDYMELYHSAR 1214
+ T+ + ++ + L +R M QD +W+ A Y E+ +A+
Sbjct: 750 LLTYREYKESWEGLQRRGMTQDLSWDNAAEKYEEVLVAAK 789
>AT5G24300.1 | chr5:8266934-8270860 FORWARD LENGTH=653
Length = 652
Score = 178 bits (452), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 153/515 (29%), Positives = 235/515 (45%), Gaps = 87/515 (16%)
Query: 769 HIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKYDCLNLSNVKDLHYRQSF 828
++V + E AP +K GGLGDV SL A+ GH V VI P+Y LN D +Y ++
Sbjct: 143 NLVFVTSEAAPYSKTGGLGDVCGSLPIALAGRGHRVMVISPRY--LN-GTAADKNYARAK 199
Query: 829 TWGNTEIKVWFGKVEDVPVYFLEPQNGMFWV----------GCVYG------RNDESRFG 872
G FG ++V Y E ++G+ WV G YG +++ RF
Sbjct: 200 DLGIRVTVNCFGGSQEVSFYH-EYRDGVDWVFVDHKSYHRPGNPYGDSKGAFGDNQFRFT 258
Query: 873 FFCHSALE---FLRQNG---SSPDIIHCHDWSSAPVAWLFKEQYAQNGL-SNGRVVFTIH 925
CH+A E L G + +DW + V L +Y G+ + R + IH
Sbjct: 259 LLCHAACEAPLVLPLGGFTYGEKSLFLVNDWHAGLVPILLAAKYRPYGVYKDARSILIIH 318
Query: 926 NLE-------------------FGA--------------------HHIGKAMARCDKATT 946
NL +GA + + A+ D+ T
Sbjct: 319 NLAHQGVEPAATYTNLGLPSEWYGAVGWVFPTWARTHALDTGEAVNVLKGAIVTSDRIIT 378
Query: 947 VSYTYSREVS----GHGA---IAPHFSKFHGIRNGIDPDIWDPYSDNFIPVHYTSENVVE 999
VS Y+ E++ G+G ++ S +GI NGI+ D W+P +D IP HY++++V E
Sbjct: 379 VSQGYAWEITTVEGGYGLQDLLSSRKSVINGITNGINVDEWNPSTDEHIPFHYSADDVSE 438
Query: 1000 GKSAAKKALQQRLGLQ-QTDTPVVGIISRLTVQKGIHLIKHAIYRTLERNGQVVLLGSAP 1058
K K ALQ+ LGL + + P++G I RL QKGI LI+ A + + Q V+LGS
Sbjct: 439 -KIKCKMALQKELGLPIRPECPMIGFIGRLDYQKGIDLIQTAGPDLMVDDIQFVMLGS-- 495
Query: 1059 DHRIQGD--FTNLASKLHGEYHGRVKLCLTYDEPLSHLIYAGADFILVPSMFEPCGLTQL 1116
GD + + + Y + + + ++ P+SH I AG D +L+PS FEPCGL QL
Sbjct: 496 -----GDPKYESWMRSMEETYRDKFRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQL 550
Query: 1117 TAMRYGSIPIVRKTGGLYXXXXXXXXXXXRAREQGLEPNGFSFEGADSNGVDYALDRAIT 1176
AMRYG+IP+V TGGL G + F + + AL A
Sbjct: 551 YAMRYGTIPVVHGTGGLRDTVENFNPYAEGGAGTGTG---WVFTPLSKDSMVSALRLAAA 607
Query: 1177 TWYDARDWFHSLCKRVMEQDWTWNRPALDYMELYH 1211
T+ + + + L +R M ++++W A+ Y +++
Sbjct: 608 TYREYKQSWEGLMRRGMTRNYSWENAAVQYEQVFQ 642
>AT1G32900.1 | chr1:11920582-11923506 REVERSE LENGTH=611
Length = 610
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 146/518 (28%), Positives = 225/518 (43%), Gaps = 96/518 (18%)
Query: 762 VAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKYD--------C 813
+ E M ++ I E+ P +K GGLGDV+ L A+ GH V I P+YD C
Sbjct: 78 IVCEKGMSVIFIGAEVGPWSKTGGLGDVLGGLPPALAARGHRVMTICPRYDQYKDAWDTC 137
Query: 814 LNLS-----NVKDLHYRQSFTWGNTEIKVWFGKVEDVPVYFLE--PQNGMFWVGCVYG-- 864
+ + V+++ + + G + V D P++ + + G G + G
Sbjct: 138 VVVQIKVGDKVENVRFFHCYKRGVDRVFV------DHPIFLAKVVGKTGSKIYGPITGVD 191
Query: 865 -RNDESRFGFFCHSALE---FLRQNGS-------SPDIIH-CHDWSSAPVAWLFKEQYAQ 912
+++ RF C +ALE L N S D++ +DW +A + K Y
Sbjct: 192 YNDNQLRFSLLCQAALEAPQVLNLNSSKYFSGPYGEDVVFVANDWHTALLPCYLKSMYQS 251
Query: 913 NGL-SNGRVVFTIHNLEFGAHH-----------------------------------IGK 936
G+ N +VVF IHN+ + +
Sbjct: 252 RGVYMNAKVVFCIHNIAYQGRFAFDDYSLLNLPISFKSSFDFMDGYEKPVKGRKINWMKA 311
Query: 937 AMARCDKATTVSYTYSREVSGHGAIAPHFSKF------HGIRNGIDPDIWDPYSDNFIPV 990
A+ + TVS Y++E+ K+ GI NG+D W+P +D +I +
Sbjct: 312 AILEAHRVLTVSPYYAQELISGVDRGVELHKYLRMKTVSGIINGMDVQEWNPSTDKYIDI 371
Query: 991 HYTSENVVEGKSAAKKALQQRLGLQ-QTDTPVVGIISRLTVQKGIHLIKHAIYRTLERNG 1049
Y V + K K+ALQ +GL D PV+G I RL QKG ++ AI + + N
Sbjct: 372 KYDITTVTDAKPLIKEALQAAVGLPVDRDVPVIGFIGRLEEQKGSDILVEAISKFMGLNV 431
Query: 1050 QVVLLGSAPDHRIQGDFTNLASKLHGEYHGRVKLCLTYDEPLSHLIYAGADFILVPSMFE 1109
Q+V+LG+ +++ L K G+ G K ++ PL+H+I AGADFI+VPS FE
Sbjct: 432 QMVILGTG-KKKMEAQILELEEKFPGKAVGVAK----FNVPLAHMITAGADFIIVPSRFE 486
Query: 1110 PCGLTQLTAMRYGSIPIVRKTGGLYXXXXXXXXXXXRAR----EQGLEPNGFSFEGADSN 1165
PCGL QL AMRYG++PIV TGGL R + ++P+ D
Sbjct: 487 PCGLIQLHAMRYGTVPIVASTGGLVDTVKDGYTGFHIGRFNVKCEVVDPD-------DVI 539
Query: 1166 GVDYALDRAITTWYDARDWFHSLCKRVMEQDWTWNRPA 1203
A+ RA+ + + K M+QD++W PA
Sbjct: 540 ATAKAVTRAVAVY--GTSAMQEMVKNCMDQDFSWKGPA 575
>AT5G65685.1 | chr5:26273252-26275864 REVERSE LENGTH=461
Length = 460
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 102/176 (57%), Gaps = 8/176 (4%)
Query: 763 AKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHNVEVILPKYDCLNLSNVKDL 822
K +H++HI EMAP+ VG L +T LS A+Q+ G+ VEVILPKY L+L ++ L
Sbjct: 186 GKRNGLHVIHICTEMAPLVSVGPLASYITGLSCALQEEGYMVEVILPKYSTLDLDEIEGL 245
Query: 823 HYRQ--SFTWGNTEI---KVWFGKVEDVPVYFLEP--QNGMFWVGCVYGRNDE-SRFGFF 874
+ ++++ + ++ ++W G V + V ++P + MF VYG D+ RF +F
Sbjct: 246 REIEADAYSYFDGQLHANRIWNGVVSGIGVTLIQPVYYSSMFSRDKVYGYQDDFDRFAYF 305
Query: 875 CHSALEFLRQNGSSPDIIHCHDWSSAPVAWLFKEQYAQNGLSNGRVVFTIHNLEFG 930
++L+++ ++G PD++H H+W +A V LF + + GL R++ T + + G
Sbjct: 306 SRASLDYIAKSGKQPDVLHIHNWQTAIVGPLFWDVFVNQGLEGTRILLTCQDFDKG 361
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.134 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 26,202,320
Number of extensions: 1142256
Number of successful extensions: 3208
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3194
Number of HSP's successfully gapped: 12
Length of query: 1216
Length of database: 11,106,569
Length adjustment: 110
Effective length of query: 1106
Effective length of database: 8,090,809
Effective search space: 8948434754
Effective search space used: 8948434754
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 117 (49.7 bits)