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Os04g0620600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NOI protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.11 (0.0709) R2 : 0.298
β1 : -4.63 (0.458) R2dD : 1.08 R2D : -1.05
β2 : 0.11 (0.123) R2dC : 0.00125 R2C : -0.163
β3 : 2.48 (0.208) R2dE : 0.518 R2E : -0.294
β4 : -3.13 (0.527) R2dD*C : 0.0547 R2D*C : -0.117
β5 : -14.6 (1.52) R2dD*E : 0.997 R2D*E : -0.979
γ1 : -0.769 (0.147) R2dN8 : 0.114 R2N8 : -0.227
σ : 0.915
deviance : 379.59
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_____
C
peak time of C : 15.7
E
wheather : temperature
threshold : 25.35
memory length : 1505
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
379.59 0.915 7.11 -4.63 0.11 2.48 -3.13 -14.6 -0.769 15.7 25.35 1505 -- --
438.76 0.976 6.79 -2.41 0.178 2.25 -2.97 -- -0.561 16 9.292 38960 -- --
402.47 0.934 7.21 -5.35 0.117 3.07 -- -19 -0.766 10.9 26.42 1533 -- --
465.22 1 6.79 -2.53 0.172 2.32 -- -- -0.589 13.2 8.688 38993 -- --
402.6 0.935 7.2 -5.42 -- 3.18 -- -20.5 -0.768 -- 26.46 1599 -- --
498.65 1.05 6.59 -0.267 0.144 -- -3.17 -- 0.328 15.9 -- -- -- --
527.45 1.08 6.59 -0.309 0.15 -- -- -- 0.31 13.3 -- -- -- --
467.56 1.01 6.8 -2.55 -- 2.31 -- -- -0.614 -- -28.72 39115 -- --
468.07 1.01 6.64 -- 0.334 1.8 -- -- 0.0826 13.8 -0.8031 1295 -- --
528.85 1.07 6.6 -0.315 -- -- -- -- 0.307 -- -- -- -- --
529.97 1.08 6.59 -- 0.156 -- -- -- 0.345 13.4 -- -- -- --
472.52 1.01 6.65 -- -- 1.73 -- -- 0.083 -- 1.995 1536 -- --
531.47 1.08 6.59 -- -- -- -- -- 0.342 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 370.73 wind 3 43200 < th dose dependent rect. 21 1
2 371.24 wind 1 43200 < th dose dependent rect. 24 1
3 371.75 wind 1 43200 < th dose dependent rect. 6 2
4 372.06 radiation 40 43200 < th dose independent rect. 13 1
5 372.86 wind 1 43200 < th dose dependent rect. 20 6
7 373.30 humidity 60 43200 < th dose dependent rect. 10 6
11 373.71 temperature 25 1440 > th dose dependent rect. 16 3
13 373.76 humidity 60 43200 < th dose dependent rect. 18 22
18 374.08 wind 1 43200 < th dose dependent rect. 23 3
24 374.34 humidity 60 43200 < th dose independent rect. 19 17
31 374.47 humidity 60 43200 < th dose dependent rect. 24 16
34 374.48 humidity 60 43200 < th dose dependent rect. 2 14
46 374.75 temperature 25 1440 > th dose dependent rect. 17 1
59 375.12 humidity 60 43200 < th dose dependent sin 1 NA
82 375.61 humidity 60 43200 > th dose independent rect. 19 17
88 375.82 humidity 60 43200 < th dose dependent rect. 8 20
97 375.88 humidity 60 43200 < th dose dependent rect. 8 14
116 375.97 humidity 60 43200 < th dose independent rect. 24 12
118 375.99 humidity 60 43200 < th dose dependent rect. 14 1
129 376.13 humidity 60 43200 < th dose independent rect. 8 4
152 376.39 radiation 40 43200 < th dose independent rect. 11 8
154 376.39 radiation 40 43200 < th dose independent rect. 11 12
161 376.40 radiation 40 43200 < th dose independent rect. 11 15
163 376.40 radiation 40 43200 < th dose independent rect. 11 18
180 376.44 humidity 60 43200 < th dose dependent rect. 14 23
195 376.50 humidity 60 43200 < th dose dependent rect. 24 22
197 376.51 humidity 60 43200 < th dose dependent no NA NA
201 376.51 humidity 60 43200 < th dose dependent rect. 2 20
227 376.62 radiation 30 43200 > th dose dependent rect. 13 1
300 376.93 humidity 60 43200 > th dose independent rect. 8 4
318 377.01 humidity 60 43200 < th dose independent rect. 11 1
345 377.08 radiation 30 43200 > th dose dependent rect. 11 3
368 377.21 radiation 30 43200 < th dose independent sin 21 NA
377 377.27 radiation 10 43200 < th dose independent rect. 7 1
422 377.38 radiation 30 43200 < th dose independent rect. 16 23
423 377.40 radiation 30 43200 < th dose independent rect. 6 9
430 377.40 radiation 30 43200 < th dose independent rect. 22 17
432 377.40 radiation 30 43200 < th dose independent rect. 18 21
441 377.45 humidity 60 43200 > th dose independent rect. 9 1
466 377.56 temperature 25 4320 > th dose independent rect. 10 1
494 377.63 radiation 30 43200 < th dose independent rect. 5 14
501 377.63 radiation 30 43200 < th dose independent rect. 2 17
505 377.63 radiation 30 43200 < th dose independent rect. 5 18
512 377.63 radiation 30 43200 < th dose independent rect. 2 21
515 377.63 radiation 30 43200 < th dose independent rect. 22 21
520 377.63 radiation 30 43200 < th dose independent rect. 4 23
523 377.64 radiation 30 43200 < th dose independent no NA NA
601 377.68 radiation 30 43200 > th dose dependent rect. 11 21
624 377.76 wind 5 43200 < th dose independent rect. 13 1
653 377.87 humidity 70 43200 < th dose independent rect. 8 1
674 378.00 radiation 30 43200 > th dose independent rect. 13 1
708 378.14 temperature 25 1440 > th dose dependent sin 18 NA
852 378.28 humidity 70 43200 < th dose dependent rect. 8 2
853 378.29 radiation 40 43200 > th dose independent rect. 11 3
913 378.46 radiation 20 43200 < th dose independent rect. 7 3
943 378.52 radiation 20 43200 < th dose independent sin 11 NA