BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0620600 Os04g0620600|AK121449
(92 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G55850.2 | chr5:22603617-22604951 FORWARD LENGTH=131 68 7e-13
AT5G63270.1 | chr5:25365498-25365949 REVERSE LENGTH=81 65 6e-12
AT5G40645.1 | chr5:16280410-16280883 REVERSE LENGTH=74 65 7e-12
AT3G48450.1 | chr3:17944232-17944788 REVERSE LENGTH=90 65 9e-12
AT2G04410.1 | chr2:1534012-1535040 REVERSE LENGTH=74 62 5e-11
AT2G17660.1 | chr2:7673359-7673568 FORWARD LENGTH=70 62 8e-11
AT4G35655.1 | chr4:16910755-16910961 FORWARD LENGTH=69 58 1e-09
AT3G25070.1 | chr3:9132458-9133747 FORWARD LENGTH=212 45 1e-05
>AT5G55850.2 | chr5:22603617-22604951 FORWARD LENGTH=131
Length = 130
Score = 68.2 bits (165), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/42 (80%), Positives = 37/42 (88%), Gaps = 1/42 (2%)
Query: 5 DKGRALPKFGEWDVKNPASAEGFTVIFQKARDDKKTTG-PGN 45
DKGR LPKFGEWDV +PASAEGFTVIF KARD+KKT G PG+
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGS 60
>AT5G63270.1 | chr5:25365498-25365949 REVERSE LENGTH=81
Length = 80
Score = 65.5 bits (158), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 5 DKGRALPKFGEWDVKNPASAEGFTVIFQKARDDKKT---TGPGNARVGIPPAFRSTDDDG 61
+KG+ LPKFGEWDV NPASAEGFTVIF KA D+KKT +G G + P +++D +
Sbjct: 4 NKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNSLVSPQRNQNSDQNN 63
Query: 62 GYRPE 66
+ +
Sbjct: 64 NHSSQ 68
>AT5G40645.1 | chr5:16280410-16280883 REVERSE LENGTH=74
Length = 73
Score = 65.1 bits (157), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 32/39 (82%)
Query: 8 RALPKFGEWDVKNPASAEGFTVIFQKARDDKKTTGPGNA 46
R LPKFGEWDV +PASAEGFTVIF KARDDKKT G A
Sbjct: 13 RPLPKFGEWDVNDPASAEGFTVIFAKARDDKKTNASGRA 51
>AT3G48450.1 | chr3:17944232-17944788 REVERSE LENGTH=90
Length = 89
Score = 64.7 bits (156), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/40 (75%), Positives = 32/40 (80%)
Query: 1 MTTMDKGRALPKFGEWDVKNPASAEGFTVIFQKARDDKKT 40
M T ++ R LPKFGEWD NP SAEGFTVIF KARDDKKT
Sbjct: 1 MATGNRARPLPKFGEWDATNPGSAEGFTVIFNKARDDKKT 40
>AT2G04410.1 | chr2:1534012-1535040 REVERSE LENGTH=74
Length = 73
Score = 62.0 bits (149), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/38 (76%), Positives = 33/38 (86%)
Query: 5 DKGRALPKFGEWDVKNPASAEGFTVIFQKARDDKKTTG 42
DKGR LPKFGEWDV +P+SAEGFTVIF KAR++KK G
Sbjct: 3 DKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGG 40
>AT2G17660.1 | chr2:7673359-7673568 FORWARD LENGTH=70
Length = 69
Score = 61.6 bits (148), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/40 (70%), Positives = 34/40 (85%)
Query: 1 MTTMDKGRALPKFGEWDVKNPASAEGFTVIFQKARDDKKT 40
M + + GRALPKFGEWDV +PA+A+GFTVIF KA +DKKT
Sbjct: 1 MASNEAGRALPKFGEWDVNDPATADGFTVIFSKAGEDKKT 40
>AT4G35655.1 | chr4:16910755-16910961 FORWARD LENGTH=69
Length = 68
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 31/40 (77%)
Query: 1 MTTMDKGRALPKFGEWDVKNPASAEGFTVIFQKARDDKKT 40
M + R LPKFGEWDV +PA+AEGFTVIF KA +DKKT
Sbjct: 1 MASNSDARPLPKFGEWDVNDPATAEGFTVIFSKAGEDKKT 40
>AT3G25070.1 | chr3:9132458-9133747 FORWARD LENGTH=212
Length = 211
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 27/36 (75%)
Query: 5 DKGRALPKFGEWDVKNPASAEGFTVIFQKARDDKKT 40
+K +PKFG+WD NP+SA+G+T IF K R+++ +
Sbjct: 143 EKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSS 178
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.135 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,497,422
Number of extensions: 100903
Number of successful extensions: 205
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 8
Length of query: 92
Length of database: 11,106,569
Length adjustment: 63
Effective length of query: 29
Effective length of database: 9,379,361
Effective search space: 272001469
Effective search space used: 272001469
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)