Os04g0620400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SIT4 phosphatase-associated protein family protein.
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Os04g0620400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SIT4 phosphatase-associated protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.56 | 0.344 | 7.62 | 0.211 | 0.294 | -0.909 | -0.72 | -0.124 | 0.55 | 5.7 | 2.043 | 209 | -- | -- |
| 53.57 | 0.341 | 7.62 | 0.214 | 0.289 | -0.915 | -0.697 | -- | 0.548 | 5.88 | 1.405 | 209 | -- | -- |
| 54.58 | 0.344 | 7.62 | 0.203 | 0.34 | -0.931 | -- | 0.0439 | 0.544 | 6.27 | 1.48 | 174 | -- | -- |
| 54.54 | 0.344 | 7.62 | 0.199 | 0.337 | -0.967 | -- | -- | 0.545 | 6.57 | 1.259 | 169 | -- | -- |
| 56.39 | 0.35 | 7.62 | 0.225 | -- | -1.08 | -- | 0.183 | 0.575 | -- | -0.1564 | 278 | -- | -- |
| 66.27 | 0.382 | 7.63 | 0.172 | 0.748 | -- | -0.48 | -- | 0.492 | 3.29 | -- | -- | -- | -- |
| 67 | 0.383 | 7.63 | 0.181 | 0.745 | -- | -- | -- | 0.495 | 3.22 | -- | -- | -- | -- |
| 56.45 | 0.35 | 7.62 | 0.226 | -- | -1.08 | -- | -- | 0.574 | -- | 0.2116 | 278 | -- | -- |
| 55.57 | 0.347 | 7.62 | -- | 0.34 | -0.955 | -- | -- | 0.523 | 6.42 | 1.57 | 169 | -- | -- |
| 98.48 | 0.464 | 7.63 | 0.212 | -- | -- | -- | -- | 0.514 | -- | -- | -- | -- | -- |
| 67.86 | 0.385 | 7.64 | -- | 0.748 | -- | -- | -- | 0.475 | 3.22 | -- | -- | -- | -- |
| 57.81 | 0.354 | 7.62 | -- | -- | -1.08 | -- | -- | 0.549 | -- | -2.326 | 278 | -- | -- |
| 99.67 | 0.466 | 7.64 | -- | -- | -- | -- | -- | 0.491 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.05 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 16 |
| 2 | 52.19 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 23 |
| 3 | 52.31 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 7 | 52.72 | radiation | 1 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 8 | 52.79 | radiation | 40 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 9 | 52.81 | radiation | 1 | 270 | > th | dose dependent | sin | 3 | NA |
| 14 | 52.93 | humidity | 70 | 90 | > th | dose independent | rect. | 5 | 16 |
| 17 | 53.02 | humidity | 70 | 270 | > th | dose independent | rect. | 3 | 16 |
| 35 | 53.39 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 36 | 53.39 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 11 |
| 61 | 53.51 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 65 | 53.56 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 12 |
| 81 | 53.67 | radiation | 20 | 270 | < th | dose independent | rect. | 10 | 22 |
| 95 | 53.69 | radiation | 40 | 10 | < th | dose independent | rect. | 5 | 17 |
| 114 | 53.71 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 12 |
| 129 | 53.78 | radiation | 40 | 270 | < th | dose dependent | sin | 2 | NA |
| 160 | 53.90 | humidity | 70 | 270 | > th | dose independent | rect. | 10 | 22 |
| 184 | 53.91 | radiation | 1 | 270 | > th | dose dependent | no | NA | NA |
| 244 | 53.94 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 264 | 53.98 | humidity | 60 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 310 | 54.10 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 16 |
| 315 | 54.12 | radiation | 20 | 270 | < th | dose independent | rect. | 3 | 14 |
| 333 | 54.21 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 18 |
| 334 | 54.21 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 22 |
| 438 | 54.47 | humidity | 60 | 90 | > th | dose dependent | sin | 23 | NA |
| 446 | 54.50 | radiation | 40 | 270 | > th | dose independent | rect. | 14 | 22 |
| 452 | 54.52 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 20 |
| 453 | 54.52 | radiation | 1 | 90 | > th | dose dependent | sin | 22 | NA |
| 473 | 54.56 | radiation | 40 | 270 | < th | dose dependent | no | NA | NA |
| 492 | 54.60 | humidity | 90 | 90 | < th | dose dependent | rect. | 8 | 10 |
| 519 | 54.64 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 22 |
| 658 | 54.73 | radiation | 20 | 270 | > th | dose independent | sin | 3 | NA |
| 665 | 54.75 | humidity | 90 | 90 | < th | dose dependent | sin | 0 | NA |
| 710 | 54.82 | radiation | 40 | 270 | > th | dose independent | sin | 7 | NA |
| 711 | 54.82 | humidity | 70 | 90 | > th | dose independent | rect. | 5 | 12 |
| 718 | 54.86 | radiation | 20 | 270 | > th | dose independent | rect. | 15 | 23 |
| 730 | 54.90 | radiation | 40 | 270 | < th | dose independent | rect. | 11 | 11 |
| 734 | 54.91 | radiation | 20 | 90 | < th | dose independent | rect. | 5 | 18 |
| 839 | 55.01 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 882 | 55.10 | humidity | 80 | 90 | < th | dose independent | rect. | 9 | 9 |
| 925 | 55.15 | radiation | 40 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 969 | 55.24 | humidity | 70 | 90 | > th | dose independent | rect. | 13 | 22 |