Os04g0618500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Gamma-SNAP (Fragment).
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Os04g0618500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Gamma-SNAP (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.74 | 0.209 | 12 | -0.738 | 0.791 | -0.301 | 0.559 | -1.64 | -0.0753 | 24 | 20.5 | 1059 | -- | -- |
| 24.09 | 0.23 | 12 | -0.444 | 0.681 | -0.177 | 0.219 | -- | 0.0503 | 23.6 | 25.2 | 2537 | -- | -- |
| 20.58 | 0.211 | 12 | -0.759 | 0.774 | -0.311 | -- | -1.71 | -0.0794 | 0.0825 | 20.5 | 1398 | -- | -- |
| 23.06 | 0.224 | 11.9 | -0.00423 | 0.781 | -0.459 | -- | -- | 0.194 | 0.12 | 24.32 | 47520 | -- | -- |
| 56.32 | 0.351 | 12 | -0.483 | -- | -0.345 | -- | -0.409 | 0.0288 | -- | 21.1 | 1609 | -- | -- |
| 26.25 | 0.24 | 12 | -0.483 | 0.768 | -- | 0.225 | -- | -0.0349 | 0.0675 | -- | -- | -- | -- |
| 26.47 | 0.241 | 12 | -0.492 | 0.767 | -- | -- | -- | -0.036 | 0.09 | -- | -- | -- | -- |
| 49.85 | 0.33 | 11.9 | -0.364 | -- | -0.383 | -- | -- | 0.166 | -- | 24.8 | 1644 | -- | -- |
| 23.06 | 0.224 | 11.9 | -- | 0.781 | -0.462 | -- | -- | 0.195 | 0.12 | 24.3 | 47520 | -- | -- |
| 63.52 | 0.372 | 12 | -0.468 | -- | -- | -- | -- | -0.0249 | -- | -- | -- | -- | -- |
| 32.85 | 0.268 | 12 | -- | 0.761 | -- | -- | -- | 0.0188 | 0.054 | -- | -- | -- | -- |
| 53.27 | 0.341 | 11.9 | -- | -- | -0.41 | -- | -- | 0.219 | -- | 24.8 | 1644 | -- | -- |
| 69.29 | 0.389 | 12 | -- | -- | -- | -- | -- | 0.027 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.67 | temperature | 20 | 270 | > th | dose dependent | sin | 6 | NA |
| 8 | 19.44 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 9 | 19.47 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 15 |
| 46 | 20.01 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 20 |
| 53 | 20.05 | temperature | 20 | 720 | > th | dose independent | rect. | 13 | 20 |
| 89 | 20.17 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 20 |
| 107 | 20.21 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 2 |
| 119 | 20.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 123 | 20.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 12 | 23 |
| 141 | 20.27 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 146 | 20.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 18 |
| 178 | 20.32 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 179 | 20.32 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 7 |
| 324 | 20.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 345 | 20.41 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 346 | 20.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 508 | 20.47 | temperature | 10 | 1440 | > th | dose dependent | sin | 12 | NA |
| 622 | 20.51 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 633 | 20.51 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 3 |
| 646 | 20.51 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 16 |
| 660 | 20.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 737 | 20.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 5 |
| 789 | 20.56 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 828 | 20.57 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 841 | 20.57 | temperature | 25 | 720 | < th | dose dependent | sin | 3 | NA |