BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0618500 Os04g0618500|AK103625
         (298 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0618500  Similar to Gamma-SNAP (Fragment)                    580   e-166

>Os04g0618500 Similar to Gamma-SNAP (Fragment)
          Length = 298

 Score =  580 bits (1496), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 284/284 (100%), Positives = 284/284 (100%)

Query: 1   MASSSSDPDKLMSKADKLTKLSFTRWNADWKSATSLYEQAAIAYRFKKENEKAKDAFEKA 60
           MASSSSDPDKLMSKADKLTKLSFTRWNADWKSATSLYEQAAIAYRFKKENEKAKDAFEKA
Sbjct: 1   MASSSSDPDKLMSKADKLTKLSFTRWNADWKSATSLYEQAAIAYRFKKENEKAKDAFEKA 60

Query: 61  SKGQEMISSPWDAAKHMESAGALAKELGRWNEVSDFYRRASEFYRECGRAQPASDALAKG 120
           SKGQEMISSPWDAAKHMESAGALAKELGRWNEVSDFYRRASEFYRECGRAQPASDALAKG
Sbjct: 61  SKGQEMISSPWDAAKHMESAGALAKELGRWNEVSDFYRRASEFYRECGRAQPASDALAKG 120

Query: 121 ASFLEDNTPDEAIKMYDEACSILEEDGKEQMAFDLYRAAASLYVKLEKYSDAAATFLRLG 180
           ASFLEDNTPDEAIKMYDEACSILEEDGKEQMAFDLYRAAASLYVKLEKYSDAAATFLRLG
Sbjct: 121 ASFLEDNTPDEAIKMYDEACSILEEDGKEQMAFDLYRAAASLYVKLEKYSDAAATFLRLG 180

Query: 181 SAADKCNAINSQCKGYLSAIIIYLYAHDFQQAQKCYNDCSEVQAFLNSDQNRCAMKLLSA 240
           SAADKCNAINSQCKGYLSAIIIYLYAHDFQQAQKCYNDCSEVQAFLNSDQNRCAMKLLSA
Sbjct: 181 SAADKCNAINSQCKGYLSAIIIYLYAHDFQQAQKCYNDCSEVQAFLNSDQNRCAMKLLSA 240

Query: 241 YEEGDAEGIKQAAQSSAIKHLDHVVIRLAKKLPTGDLQTIKKLA 284
           YEEGDAEGIKQAAQSSAIKHLDHVVIRLAKKLPTGDLQTIKKLA
Sbjct: 241 YEEGDAEGIKQAAQSSAIKHLDHVVIRLAKKLPTGDLQTIKKLA 284



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.126    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,757,566
Number of extensions: 325781
Number of successful extensions: 971
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 971
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 198
Effective length of database: 11,814,401
Effective search space: 2339251398
Effective search space used: 2339251398
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)