BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0618500 Os04g0618500|AK103625
         (298 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20410.1  | chr4:11014099-11016454 REVERSE LENGTH=292          409   e-114

>AT4G20410.1 | chr4:11014099-11016454 REVERSE LENGTH=292
          Length = 291

 Score =  409 bits (1050), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 191/277 (68%), Positives = 232/277 (83%)

Query: 5   SSDPDKLMSKADKLTKLSFTRWNADWKSATSLYEQAAIAYRFKKENEKAKDAFEKASKGQ 64
           SSDPDK+MSKADK+TKL+ TRW+ADW+ AT LYEQAA  +R   + EKAK A EKASKGQ
Sbjct: 2   SSDPDKMMSKADKMTKLTLTRWSADWRGATELYEQAANGFRASNKYEKAKVALEKASKGQ 61

Query: 65  EMISSPWDAAKHMESAGALAKELGRWNEVSDFYRRASEFYRECGRAQPASDALAKGASFL 124
           EM +SPWDAAKHMESA ALA++L  WNEV+DFYR+ASE Y ECGRAQPASDAL K A  L
Sbjct: 62  EMQASPWDAAKHMESAAALAQKLSIWNEVADFYRKASELYVECGRAQPASDALGKAARAL 121

Query: 125 EDNTPDEAIKMYDEACSILEEDGKEQMAFDLYRAAASLYVKLEKYSDAAATFLRLGSAAD 184
           ED  PD+AI++Y +AC ILEEDG++QMAFDLYRA A++Y+KLEK++DAA  FLRLG AAD
Sbjct: 122 EDVKPDDAIQLYTDACEILEEDGRDQMAFDLYRACANVYIKLEKFTDAATFFLRLGVAAD 181

Query: 185 KCNAINSQCKGYLSAIIIYLYAHDFQQAQKCYNDCSEVQAFLNSDQNRCAMKLLSAYEEG 244
           KC+A NSQCK YLSAII+YLYAHD QQA+KCYNDCS++ AFL SDQ+R A +LL+AY EG
Sbjct: 182 KCDATNSQCKAYLSAIILYLYAHDLQQAEKCYNDCSQIDAFLKSDQSRSASRLLTAYNEG 241

Query: 245 DAEGIKQAAQSSAIKHLDHVVIRLAKKLPTGDLQTIK 281
           D E IK+ A +S + +LDH++I+LA+KLPTGD+  I+
Sbjct: 242 DIEEIKKVASASTVSNLDHMIIKLARKLPTGDVTAIQ 278



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.126    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,658,445
Number of extensions: 213561
Number of successful extensions: 797
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 796
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 200
Effective length of database: 8,419,801
Effective search space: 1683960200
Effective search space used: 1683960200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)