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Os04g0612600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Coatomer-like protein, epsilon subunit.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0177) R2 : 0.000204
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0114 (0.0372) R2dN8 : 0.000264 R2N8 : 0.000204
σ : 0.333
deviance : 50.9
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.74 0.273 12.2 -0.166 0.445 0.749 -1.1 0.6 -0.0146 9.59 5.945 572 -- --
33.86 0.271 12.2 -0.177 0.444 0.654 -1.14 -- -0.00989 9.58 6 572 -- --
37.7 0.286 12.2 -0.203 0.441 0.778 -- 1.46 -0.0141 9.15 5.908 568 -- --
38.59 0.289 12.2 -0.201 0.445 0.607 -- -- -0.00948 9.03 5.971 543 -- --
46.76 0.318 12.3 -0.233 -- 0.64 -- 1.7 -0.0141 -- 6.8 1393 -- --
37.17 0.286 12.2 -0.298 0.318 -- -1.03 -- -0.0235 10.2 -- -- -- --
41.12 0.3 12.2 -0.342 0.338 -- -- -- -0.0281 9.36 -- -- -- --
46.86 0.319 12.2 -0.27 -- 0.336 -- -- -0.000332 -- 7.4 1330 -- --
39.94 0.294 12.2 -- 0.452 0.66 -- -- 0.0135 9.05 5.9 563 -- --
47.78 0.323 12.2 -0.344 -- -- -- -- -0.0268 -- -- -- -- --
44.2 0.311 12.2 -- 0.338 -- -- -- 0.01 9.44 -- -- -- --
48.2 0.323 12.2 -- -- 0.412 -- -- 0.0232 -- 6.211 10187 -- --
50.9 0.333 12.2 -- -- -- -- -- 0.0114 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.62 wind 5.0 30 < th dose independent rect. 14 15
3 32.73 wind 7.0 720 < th dose independent rect. 15 3
5 32.79 wind 7.0 720 < th dose independent rect. 21 21
8 32.88 wind 7.0 720 < th dose independent rect. 23 19
14 33.00 wind 7.0 720 < th dose independent rect. 6 21
16 33.05 wind 7.0 270 < th dose independent rect. 13 14
20 33.10 wind 9.0 30 < th dose dependent rect. 14 15
24 33.14 wind 9.0 270 < th dose dependent rect. 13 14
27 33.16 wind 7.0 720 < th dose independent rect. 7 18
40 33.28 humidity 50.0 30 > th dose independent rect. 5 9
51 33.36 atmosphere 995.0 30 > th dose independent rect. 14 15
57 33.39 radiation 40.0 30 < th dose dependent rect. 14 15
81 33.53 temperature 10.0 30 > th dose independent rect. 5 9
83 33.53 atmosphere 995.0 30 > th dose independent rect. 5 9
84 33.53 atmosphere 1015.0 30 < th dose independent rect. 5 9
85 33.53 precipitation 0.1 30 < th dose independent rect. 5 9
87 33.53 temperature 10.0 30 > th dose independent rect. 14 15
88 33.53 precipitation 0.1 30 < th dose dependent rect. 5 9
109 33.58 radiation 40.0 30 < th dose independent rect. 14 15
111 33.59 wind 9.0 30 < th dose independent rect. 5 9
118 33.60 wind 7.0 720 < th dose independent rect. 6 12
138 33.65 precipitation 0.1 30 < th dose independent rect. 14 15
141 33.65 precipitation 0.1 30 < th dose dependent rect. 14 15
143 33.65 temperature 10.0 30 > th dose dependent rect. 23 21
170 33.74 wind 7.0 1440 > th dose independent rect. 14 2
173 33.74 wind 9.0 720 < th dose dependent rect. 15 3
188 33.79 wind 5.0 1440 > th dose dependent rect. 14 2
210 33.84 temperature 10.0 10 > th dose dependent rect. 14 15
217 33.86 temperature 15.0 30 > th dose dependent rect. 8 21
219 33.87 wind 7.0 720 < th dose independent rect. 21 14
227 33.89 radiation 1.0 1440 < th dose independent rect. 11 1
228 33.89 atmosphere 1005.0 270 > th dose independent rect. 22 6
231 33.89 atmosphere 1015.0 30 < th dose independent rect. 14 15
234 33.89 radiation 1.0 1440 < th dose dependent rect. 11 1
248 33.92 radiation 1.0 1440 > th dose independent rect. 11 3
265 33.94 wind 7.0 720 < th dose independent rect. 15 10
267 33.94 temperature 15.0 270 > th dose independent rect. 18 13
278 33.95 wind 9.0 720 < th dose dependent rect. 23 19
296 33.98 wind 5.0 720 < th dose independent sin 21 NA
303 33.98 temperature 30.0 30 < th dose dependent rect. 5 9
304 33.98 wind 9.0 720 < th dose dependent rect. 6 13
320 34.00 wind 9.0 720 < th dose dependent rect. 13 6
344 34.03 radiation 1.0 270 < th dose dependent rect. 3 20
355 34.04 wind 7.0 720 < th dose independent rect. 15 18
356 34.04 wind 5.0 1440 > th dose dependent rect. 13 5
372 34.06 radiation 1.0 10 > th dose independent sin 4 NA
374 34.06 radiation 10.0 1440 < th dose independent rect. 14 1
379 34.06 humidity 50.0 720 > th dose independent rect. 11 19
421 34.09 temperature 25.0 720 < th dose dependent rect. 17 4
443 34.11 humidity 90.0 270 > th dose dependent rect. 5 1
448 34.11 wind 9.0 720 < th dose dependent rect. 6 19
450 34.11 temperature 10.0 30 > th dose dependent rect. 23 23
473 34.13 wind 7.0 720 < th dose independent sin 19 NA
478 34.13 precipitation 0.1 270 < th dose independent rect. 13 14
480 34.13 humidity 50.0 720 > th dose independent rect. 9 22
484 34.13 precipitation 0.1 270 < th dose dependent rect. 13 14
486 34.13 temperature 15.0 90 > th dose dependent rect. 1 18
488 34.14 temperature 15.0 720 > th dose independent rect. 18 5
508 34.15 humidity 50.0 30 > th dose dependent rect. 5 8
519 34.16 atmosphere 1010.0 90 < th dose independent rect. 19 14
525 34.16 temperature 10.0 90 > th dose dependent rect. 21 23
532 34.18 wind 5.0 720 < th dose independent rect. 7 2
539 34.18 wind 5.0 720 > th dose independent rect. 18 22
548 34.19 humidity 90.0 30 > th dose independent rect. 5 3
563 34.20 radiation 1.0 10 > th dose independent rect. 5 9
578 34.20 radiation 1.0 270 < th dose independent rect. 3 20
585 34.20 wind 5.0 720 > th dose dependent rect. 20 20
604 34.21 temperature 10.0 270 > th dose dependent rect. 21 21
606 34.22 wind 5.0 720 < th dose independent sin 6 NA
611 34.22 temperature 20.0 270 > th dose independent rect. 13 13
644 34.23 humidity 60.0 720 > th dose dependent rect. 20 1
666 34.24 temperature 25.0 270 < th dose dependent rect. 12 18
677 34.25 wind 9.0 90 < th dose dependent rect. 9 10
695 34.26 temperature 25.0 270 < th dose dependent rect. 15 14
722 34.27 wind 5.0 720 > th dose dependent rect. 13 23
736 34.28 temperature 25.0 720 < th dose dependent sin 18 NA
753 34.29 temperature 20.0 720 > th dose independent rect. 13 6
786 34.30 wind 5.0 90 < th dose independent rect. 9 10
815 34.31 humidity 90.0 30 > th dose dependent rect. 5 7
824 34.32 wind 5.0 720 < th dose independent rect. 6 5
842 34.32 wind 5.0 720 > th dose independent rect. 7 19
847 34.32 temperature 10.0 90 > th dose dependent rect. 8 11
869 34.33 temperature 20.0 10 < th dose independent rect. 19 14
877 34.33 wind 7.0 30 < th dose independent rect. 8 21
899 34.34 precipitation 0.1 720 < th dose independent rect. 16 2
900 34.34 temperature 25.0 30 < th dose independent rect. 5 9
919 34.34 temperature 20.0 270 > th dose independent rect. 6 22
920 34.34 atmosphere 1015.0 270 < th dose dependent rect. 5 1
921 34.34 precipitation 0.1 720 < th dose dependent rect. 16 2
926 34.34 temperature 25.0 720 < th dose dependent rect. 10 15
947 34.35 temperature 20.0 270 > th dose independent rect. 21 21
961 34.35 temperature 30.0 30 < th dose dependent rect. 5 21
966 34.36 temperature 15.0 720 > th dose independent rect. 19 2
991 34.36 temperature 20.0 10 > th dose independent rect. 8 21
994 34.36 temperature 25.0 270 < th dose dependent sin 14 NA