BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0612600 Os04g0612600|AK060707
         (287 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G30630.1  | chr1:10858546-10860173 REVERSE LENGTH=293          487   e-138
AT2G34840.1  | chr2:14702603-14704165 FORWARD LENGTH=294          478   e-135

>AT1G30630.1 | chr1:10858546-10860173 REVERSE LENGTH=293
          Length = 292

 Score =  487 bits (1254), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 228/289 (78%), Positives = 262/289 (90%), Gaps = 2/289 (0%)

Query: 1   MASPDLLFNLRNLFYLGAYQAAINNSDVPGLDADAAAERDAIVFRSYVALGSYQLVISEI 60
           MA PD LFNLRN FYLGAYQAAINNS++P L  +   ERD +V R+Y+ALGSYQLVISEI
Sbjct: 4   MAGPDHLFNLRNHFYLGAYQAAINNSEIPNLSQEDIVERDCLVHRAYIALGSYQLVISEI 63

Query: 61  DSSAATSLQAVKLLALYLSG--DKESAIVSLKEWLSDSAVGSNPVLRLIAGIIFMHEQDY 118
           D +AAT LQAVKLLA+YLS   +KES I SL+EWL+D  VG+N ++RLIAG IFMHE+DY
Sbjct: 64  DEAAATPLQAVKLLAMYLSSPENKESTISSLREWLADPTVGNNAIIRLIAGTIFMHEEDY 123

Query: 119 TEALKHTHSGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQIDEDHTLTQLANAWLDIAV 178
            EALKHTHSGGT+DLHALNVQIFIKMHRSD+AEKQL++MQQIDEDHTLTQLA+AWL++AV
Sbjct: 124 NEALKHTHSGGTMDLHALNVQIFIKMHRSDFAEKQLRVMQQIDEDHTLTQLASAWLNLAV 183

Query: 179 GGSKIREAYLIFQDFAEKYPMTGMVLNGKAVCCMHMGSFDEAETLLLEALNKDAKDPETL 238
           GGSKI+EAYLIFQDF+EKYPMT ++LNGKAVCCMHMG+F+EAETLLLEALNKDAKDPETL
Sbjct: 184 GGSKIQEAYLIFQDFSEKYPMTSLILNGKAVCCMHMGNFEEAETLLLEALNKDAKDPETL 243

Query: 239 ANLIVCNLHLGKPSSRYLSQLKLSHPDHVLVKRAVSAEDNFERALQAVA 287
           ANL+VC+LH+GK SSRYL+QLKLSHP+HVLVKRA SAEDNFERALQ+ A
Sbjct: 244 ANLVVCSLHVGKSSSRYLNQLKLSHPEHVLVKRAASAEDNFERALQSFA 292



>AT2G34840.1 | chr2:14702603-14704165 FORWARD LENGTH=294
          Length = 293

 Score =  478 bits (1230), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 225/288 (78%), Positives = 259/288 (89%), Gaps = 2/288 (0%)

Query: 2   ASPDLLFNLRNLFYLGAYQAAINNSDVPGLDADAAAERDAIVFRSYVALGSYQLVISEID 61
           A PD LFNLRN FYLGAYQ AINNS++  L  + A ERD +VFRSY+ALGSYQLVISEID
Sbjct: 6   AGPDHLFNLRNNFYLGAYQTAINNSEIANLSPENAVERDCLVFRSYIALGSYQLVISEID 65

Query: 62  SSAATSLQAVKLLALYLSG--DKESAIVSLKEWLSDSAVGSNPVLRLIAGIIFMHEQDYT 119
            SAAT LQAVKLLA+YLS   +KES I SLKEWL+DS +G+N  LRLIAGIIFMHE+DY 
Sbjct: 66  ESAATPLQAVKLLAMYLSTPQNKESTISSLKEWLADSTIGNNDTLRLIAGIIFMHEEDYN 125

Query: 120 EALKHTHSGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQIDEDHTLTQLANAWLDIAVG 179
           E LKHTH+GGT+DL+ALNVQIFIKMHR++YAEKQL++MQQIDEDHTLTQLA+AWL++AVG
Sbjct: 126 ETLKHTHAGGTMDLYALNVQIFIKMHRAEYAEKQLRVMQQIDEDHTLTQLASAWLNLAVG 185

Query: 180 GSKIREAYLIFQDFAEKYPMTGMVLNGKAVCCMHMGSFDEAETLLLEALNKDAKDPETLA 239
           GSKI+EAYLIF+DF+EKYPMT ++LNGKAVCCM MG+FDEAETLLLEALNKDAKDPETLA
Sbjct: 186 GSKIQEAYLIFEDFSEKYPMTCLILNGKAVCCMQMGNFDEAETLLLEALNKDAKDPETLA 245

Query: 240 NLIVCNLHLGKPSSRYLSQLKLSHPDHVLVKRAVSAEDNFERALQAVA 287
           NL+VC+LH+GK SSR+LSQLKLSHP+H+LVKR  SAEDNFERA+Q VA
Sbjct: 246 NLVVCSLHVGKSSSRHLSQLKLSHPEHILVKRVSSAEDNFERAVQLVA 293



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.133    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,712,484
Number of extensions: 218328
Number of successful extensions: 585
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 583
Number of HSP's successfully gapped: 2
Length of query: 287
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 189
Effective length of database: 8,419,801
Effective search space: 1591342389
Effective search space used: 1591342389
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)