Os04g0601700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Vacuolar ATP synthase subunit G 1 (EC 3.6.3.14) (V-ATPase G subunit 1) (Vacuolar proton pump G subunit 1).
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Os04g0601700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Vacuolar ATP synthase subunit G 1 (EC 3.6.3.14) (V-ATPase G subunit 1) (Vacuolar proton pump G subunit 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.96 | 0.308 | 12.3 | -2.39 | 0.331 | 0.563 | -0.367 | -2.96 | -0.69 | 14.6 | 16.72 | 1302 | -- | -- |
| 50.16 | 0.33 | 12.2 | -1.79 | 0.331 | 0.575 | -0.0703 | -- | -0.517 | 14.9 | 13.71 | 5502 | -- | -- |
| 43.1 | 0.306 | 12.3 | -2.39 | 0.289 | 0.54 | -- | -2.87 | -0.688 | 14.7 | 16.73 | 1541 | -- | -- |
| 50.09 | 0.33 | 12.2 | -1.79 | 0.304 | 0.593 | -- | -- | -0.525 | 14.7 | 10.78 | 5703 | -- | -- |
| 47.6 | 0.321 | 12.3 | -2.41 | -- | 0.553 | -- | -2.98 | -0.701 | -- | 16.74 | 1711 | -- | -- |
| 55.93 | 0.351 | 12.2 | -1.5 | 0.287 | -- | -0.124 | -- | -0.398 | 14.7 | -- | -- | -- | -- |
| 55.98 | 0.35 | 12.2 | -1.51 | 0.287 | -- | -- | -- | -0.399 | 14.7 | -- | -- | -- | -- |
| 53.61 | 0.343 | 12.2 | -1.65 | -- | 0.704 | -- | -- | -0.5 | -- | 6.91 | 6119 | -- | -- |
| 78.93 | 0.414 | 12.1 | -- | 0.272 | -0.916 | -- | -- | 0.0866 | 14.9 | 18.25 | 47520 | -- | -- |
| 60.76 | 0.364 | 12.2 | -1.52 | -- | -- | -- | -- | -0.406 | -- | -- | -- | -- | -- |
| 115.8 | 0.503 | 12.1 | -- | 0.316 | -- | -- | -- | -0.231 | 14.8 | -- | -- | -- | -- |
| 83.24 | 0.425 | 12.1 | -- | -- | -0.932 | -- | -- | 0.0852 | -- | 18.26 | 47520 | -- | -- |
| 121.61 | 0.515 | 12.1 | -- | -- | -- | -- | -- | -0.237 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.16 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 2 | 42.19 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 3 | 42.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 4 | 42.23 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 5 | 42.24 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 11 | 42.27 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 16 | 42.31 | temperature | 15 | 1440 | > th | dose dependent | rect. | 14 | 14 |
| 41 | 42.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 48 | 42.40 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 61 | 42.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 63 | 42.41 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 72 | 42.42 | temperature | 15 | 1440 | > th | dose dependent | sin | 15 | NA |
| 118 | 42.49 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 137 | 42.52 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 150 | 42.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 13 |
| 152 | 42.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 15 |
| 215 | 42.63 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |
| 216 | 42.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 264 | 42.67 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 8 |
| 287 | 42.69 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 11 |
| 303 | 42.71 | humidity | 90 | 14400 | > th | dose independent | sin | 11 | NA |
| 306 | 42.71 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 307 | 42.71 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 367 | 42.78 | humidity | 90 | 14400 | > th | dose dependent | sin | 12 | NA |
| 376 | 42.79 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 396 | 42.81 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 490 | 42.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 531 | 42.93 | humidity | 90 | 14400 | < th | dose independent | sin | 11 | NA |
| 755 | 43.12 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 764 | 43.12 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 22 |
| 882 | 43.20 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 905 | 43.21 | radiation | 10 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 956 | 43.23 | radiation | 10 | 14400 | < th | dose dependent | rect. | 19 | 10 |