BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0601700 Os04g0601700|AK059032
         (110 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G01390.1  | chr3:150265-150922 REVERSE LENGTH=111              105   5e-24
AT4G23710.1  | chr4:12350577-12351354 FORWARD LENGTH=107           86   4e-18
AT4G25950.1  | chr4:13173815-13174324 REVERSE LENGTH=109           62   7e-11

>AT3G01390.1 | chr3:150265-150922 REVERSE LENGTH=111
          Length = 110

 Score =  105 bits (262), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 57/110 (51%), Positives = 68/110 (61%)

Query: 1   MDANRRQSGIXXXXXXXXXXXXIVNAARAAKSARLXXXXXXXXXXXXXXXXQMEAEFQRK 60
           M++NR Q  I            IVNAAR AK ARL                Q E +FQRK
Sbjct: 1   MESNRGQGSIQQLLAAEVEAQHIVNAARTAKMARLKQAKEEAEKEIAEYKAQTEQDFQRK 60

Query: 61  VAESSGDSGANVKRLEQETAEKIAQLKQQAASISPEVIQMLLRHVTTVKN 110
           + E+SGDSGANVKRLEQET  KI QLK +A+ IS +V++MLL+HVTTVKN
Sbjct: 61  LEETSGDSGANVKRLEQETDTKIEQLKNEASRISKDVVEMLLKHVTTVKN 110



>AT4G23710.1 | chr4:12350577-12351354 FORWARD LENGTH=107
          Length = 106

 Score = 85.9 bits (211), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 57/103 (55%)

Query: 8   SGIXXXXXXXXXXXXIVNAARAAKSARLXXXXXXXXXXXXXXXXQMEAEFQRKVAESSGD 67
           +GI            IVNAAR AK  RL                  E  FQRK+  +SGD
Sbjct: 4   AGIQQLLAAEREAQQIVNAARTAKMTRLKQAKEEAETEVAEHKTSTEQGFQRKLEATSGD 63

Query: 68  SGANVKRLEQETAEKIAQLKQQAASISPEVIQMLLRHVTTVKN 110
           SGANVKRLEQET  KI QLK +A  IS +V+ MLL++VTTV N
Sbjct: 64  SGANVKRLEQETDAKIEQLKNEATRISKDVVDMLLKNVTTVNN 106



>AT4G25950.1 | chr4:13173815-13174324 REVERSE LENGTH=109
          Length = 108

 Score = 61.6 bits (148), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 2/108 (1%)

Query: 1   MDANRRQSGIXXXXXXXXXXXXIVNAARAAKSARLXXXXXXXXXXXXXXXXQMEAEFQRK 60
           MD+ R Q GI            IV+AAR AK AR+                ++E E+Q +
Sbjct: 1   MDSLRGQGGIQMLLTAEQEAGRIVSAARTAKLARMKQAKDEAEKEMEEYRSRLEEEYQTQ 60

Query: 61  VAESSGDSGANVKRLEQETAEKIAQLKQQAASISPEVIQMLLRHVTTV 108
           V  S  D  A+ KRL+ ET  +I  LK+ ++ +S ++++ML+++VTT 
Sbjct: 61  V--SGTDQEADAKRLDDETDVRITNLKESSSKVSKDIVKMLIKYVTTT 106



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.120    0.295 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,098,410
Number of extensions: 23125
Number of successful extensions: 147
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 3
Length of query: 110
Length of database: 11,106,569
Length adjustment: 79
Effective length of query: 31
Effective length of database: 8,940,705
Effective search space: 277161855
Effective search space used: 277161855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 104 (44.7 bits)