BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0601700 Os04g0601700|AK059032
         (110 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0601700  Similar to Vacuolar ATP synthase subunit G 1 (...   154   2e-38

>Os04g0601700 Similar to Vacuolar ATP synthase subunit G 1 (EC 3.6.3.14)
           (V-ATPase G subunit 1) (Vacuolar proton pump G subunit
           1)
          Length = 110

 Score =  154 bits (388), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/110 (74%), Positives = 82/110 (74%)

Query: 1   MDANRRQSGIXXXXXXXXXXXXIVNAARAAKSARLXXXXXXXXXXXXXXXXQMEAEFQRK 60
           MDANRRQSGI            IVNAARAAKSARL                QMEAEFQRK
Sbjct: 1   MDANRRQSGIQQLLAAEQEAQQIVNAARAAKSARLRQAKEEAEREIAEYRAQMEAEFQRK 60

Query: 61  VAESSGDSGANVKRLEQETAEKIAQLKQQAASISPEVIQMLLRHVTTVKN 110
           VAESSGDSGANVKRLEQETAEKIAQLKQQAASISPEVIQMLLRHVTTVKN
Sbjct: 61  VAESSGDSGANVKRLEQETAEKIAQLKQQAASISPEVIQMLLRHVTTVKN 110



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.120    0.295 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,743,760
Number of extensions: 35753
Number of successful extensions: 294
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 1
Length of query: 110
Length of database: 17,035,801
Length adjustment: 77
Effective length of query: 33
Effective length of database: 13,015,323
Effective search space: 429505659
Effective search space used: 429505659
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 149 (62.0 bits)