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Os04g0585900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF581 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.47 (0.0602) R2 : 0.527
β1 : -2.56 (0.225) R2dD : 0.149 R2D : -0.0566
β2 : 5.61 (0.289) R2dC : 1.57 R2C : -0.943
β3 : -7.61 (0.438) R2dE : 1.27 R2E : -1.31
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.56 (0.129) R2dN8 : 0.206 R2N8 : 0.0528
σ : 1.12
deviance : 579.41
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C
peak time of C : 1.54
E
wheather : radiation
threshold : 1.179
memory length : 760
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.13
open length of G : 18.6

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
565.8 1.12 8.48 -2.62 5.48 -7.45 0.674 1.9 -1.57 1.52 1.2 759 5.08 18.7
566.89 1.11 8.47 -2.53 5.61 -7.59 1.72 -- -1.57 1.53 1.22 759 5.13 18.6
566.22 1.11 8.48 -2.67 5.48 -7.41 -- 2.85 -1.57 1.53 1.26 759 5.13 18.6
579.41 1.12 8.47 -2.56 5.61 -7.61 -- -- -1.56 1.54 1.179 760 5.13 18.6
763.09 1.29 8.82 -3.38 -- -5.56 -- 2.28 -2.35 -- 1.794 1270 5.53 20.2
753.34 1.29 8.41 -1.7 2.27 -- 0.896 -- -1.23 21.6 -- -- -- --
756.24 1.29 8.41 -1.73 2.27 -- -- -- -1.23 21.5 -- -- -- --
647.33 1.18 8.43 -3.01 -- -5.43 -- -- -1.77 -- 0.9331 1255 4.37 23.3
747.54 1.27 8.48 -- 5.35 -6.92 -- -- -1.53 1.48 1.875 753 5.29 18.7
1061.12 1.52 8.35 -1.71 -- -- -- -- -1.23 -- -- -- -- --
835.2 1.35 8.37 -- 2.27 -- -- -- -1.03 21.5 -- -- -- --
754.92 1.28 8.38 -- -- -4.12 -- -- -1.29 -- 1.917 1195 6.9 22.6
1138.66 1.58 8.31 -- -- -- -- -- -1.04 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 573.92 radiation 1.0 720 < th dose dependent rect. 5 19
2 575.13 humidity 80.0 1440 < th dose independent rect. 7 8
3 575.37 precipitation 0.1 14400 > th dose independent rect. 13 13
5 575.45 precipitation 0.1 14400 > th dose independent rect. 15 11
7 575.57 precipitation 0.1 14400 < th dose independent rect. 13 13
8 575.57 precipitation 0.1 14400 < th dose dependent rect. 13 13
9 575.62 precipitation 0.1 14400 < th dose independent rect. 13 9
10 575.62 precipitation 0.1 14400 < th dose dependent rect. 13 9
11 575.64 precipitation 0.1 14400 > th dose independent rect. 15 7
12 575.65 precipitation 0.1 14400 > th dose independent rect. 13 9
13 575.67 precipitation 0.1 14400 < th dose independent rect. 15 7
14 575.67 precipitation 0.1 14400 < th dose independent rect. 15 11
15 575.67 precipitation 0.1 14400 < th dose dependent rect. 15 7
16 575.67 precipitation 0.1 14400 < th dose dependent rect. 15 11
31 576.05 humidity 80.0 1440 > th dose independent rect. 7 8
66 577.13 radiation 1.0 720 < th dose independent rect. 6 18
88 577.60 humidity 70.0 14400 < th dose dependent rect. 17 16
126 579.71 precipitation 0.1 14400 > th dose independent sin 18 NA
138 580.08 precipitation 0.1 14400 < th dose independent sin 18 NA
139 580.08 precipitation 0.1 14400 < th dose dependent sin 18 NA
152 580.57 precipitation 0.1 14400 > th dose dependent rect. 13 13
174 581.18 precipitation 0.1 14400 > th dose independent rect. 16 3
177 581.25 precipitation 0.1 14400 < th dose independent rect. 16 3
178 581.25 precipitation 0.1 14400 < th dose dependent rect. 16 3
201 582.32 humidity 80.0 1440 < th dose independent sin 2 NA
213 582.75 precipitation 0.1 14400 > th dose dependent rect. 15 11
215 582.79 humidity 80.0 1440 > th dose independent sin 2 NA
245 583.71 precipitation 0.1 14400 > th dose dependent rect. 16 2
256 584.33 temperature 25.0 270 < th dose independent rect. 11 19
261 584.55 humidity 60.0 14400 < th dose independent sin 12 NA
272 584.90 humidity 60.0 14400 < th dose independent rect. 15 18
286 585.33 humidity 70.0 14400 < th dose independent rect. 18 15
300 585.75 humidity 80.0 43200 < th dose independent rect. 4 4
308 586.02 precipitation 0.1 14400 > th dose dependent sin 17 NA
326 586.46 humidity 60.0 14400 > th dose independent rect. 15 18
329 586.50 humidity 60.0 14400 > th dose independent rect. 15 5
336 586.66 radiation 1.0 720 < th dose dependent rect. 3 23
337 586.67 temperature 25.0 270 < th dose independent rect. 12 17
339 586.74 humidity 70.0 14400 < th dose dependent sin 11 NA
350 587.03 humidity 60.0 14400 < th dose independent rect. 15 5
354 587.05 wind 1.0 43200 > th dose independent rect. 24 2
355 587.09 humidity 60.0 14400 > th dose independent rect. 15 8
360 587.11 humidity 60.0 14400 > th dose independent sin 12 NA
386 587.45 precipitation 0.1 14400 > th dose dependent rect. 13 6
391 587.52 temperature 30.0 90 < th dose dependent rect. 13 18
404 587.78 humidity 70.0 14400 < th dose dependent rect. 16 5
405 587.86 humidity 80.0 43200 > th dose independent rect. 3 5
422 588.07 humidity 80.0 43200 < th dose independent rect. 2 7
460 588.68 radiation 1.0 720 > th dose independent rect. 7 23
467 588.85 radiation 1.0 720 < th dose dependent sin 14 NA
474 588.94 radiation 1.0 720 < th dose dependent rect. 15 9
493 589.23 humidity 80.0 43200 < th dose independent rect. 22 11
530 590.04 wind 1.0 43200 < th dose independent rect. 24 2
533 590.13 temperature 25.0 720 < th dose independent rect. 9 15
536 590.24 humidity 70.0 1440 > th dose dependent rect. 9 5
538 590.29 humidity 70.0 1440 > th dose dependent rect. 7 8
552 590.66 humidity 70.0 14400 < th dose independent rect. 19 13
553 590.66 radiation 1.0 720 < th dose independent rect. 21 21
593 591.22 radiation 1.0 720 < th dose independent rect. 19 23
626 591.78 humidity 80.0 14400 < th dose independent rect. 13 2
635 592.00 humidity 80.0 14400 > th dose independent rect. 14 1
644 592.15 radiation 1.0 720 < th dose dependent rect. 21 21
658 592.42 humidity 80.0 1440 < th dose independent rect. 10 4
661 592.46 wind 7.0 43200 > th dose independent rect. 15 1
673 592.76 wind 7.0 43200 < th dose dependent rect. 12 1
680 592.85 temperature 30.0 270 < th dose dependent rect. 11 20
685 592.93 humidity 80.0 1440 > th dose independent rect. 10 4
697 593.29 wind 7.0 43200 < th dose independent rect. 15 1
708 593.59 wind 5.0 43200 > th dose dependent rect. 15 1
720 593.95 precipitation 0.1 43200 > th dose dependent rect. 19 1
728 594.08 humidity 70.0 14400 > th dose independent rect. 19 13
742 594.35 radiation 1.0 720 < th dose dependent rect. 1 23
747 594.55 temperature 30.0 90 < th dose dependent rect. 15 16
778 595.05 wind 3.0 43200 > th dose dependent rect. 11 8
781 595.11 humidity 80.0 1440 < th dose independent rect. 11 2
782 595.19 radiation 1.0 720 > th dose independent rect. 7 12
805 595.36 radiation 1.0 720 < th dose independent rect. 15 9
811 595.40 radiation 1.0 1440 < th dose dependent rect. 16 14
829 595.81 wind 1.0 43200 < th dose dependent rect. 11 17
865 596.12 temperature 30.0 10 < th dose dependent rect. 12 20
871 596.25 wind 1.0 43200 > th dose dependent rect. 12 2
880 596.38 precipitation 0.1 43200 > th dose independent rect. 19 1
884 596.51 radiation 1.0 1440 < th dose dependent rect. 15 17
920 596.91 humidity 70.0 1440 > th dose dependent sin 1 NA
927 596.96 precipitation 0.1 43200 < th dose independent rect. 19 1
928 596.96 precipitation 0.1 43200 < th dose dependent rect. 19 1
936 597.05 radiation 1.0 1440 < th dose dependent rect. 16 5
945 597.17 radiation 1.0 1440 < th dose dependent rect. 16 22
964 597.33 wind 9.0 43200 < th dose dependent rect. 11 5
966 597.36 temperature 25.0 720 > th dose independent rect. 7 17
978 597.52 radiation 20.0 14400 < th dose independent rect. 21 9
988 597.67 radiation 1.0 720 < th dose dependent rect. 4 14
1000 597.89 humidity 70.0 720 > th dose dependent rect. 5 19