BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0585900 Os04g0585900|AK070920
(91 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G47060.1 | chr5:19116843-19117639 FORWARD LENGTH=178 56 4e-09
AT4G17670.1 | chr4:9833948-9834663 REVERSE LENGTH=160 55 6e-09
AT2G44670.1 | chr2:18425279-18425673 FORWARD LENGTH=94 52 6e-08
AT1G22160.1 | chr1:7823238-7823774 FORWARD LENGTH=148 50 2e-07
AT5G65040.1 | chr5:25977864-25978350 REVERSE LENGTH=114 49 5e-07
AT1G53903.1 | chr1:20132363-20132842 FORWARD LENGTH=127 45 7e-06
AT1G53885.1 | chr1:20119798-20120277 FORWARD LENGTH=127 45 7e-06
>AT5G47060.1 | chr5:19116843-19117639 FORWARD LENGTH=178
Length = 177
Score = 55.8 bits (133), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 29/36 (80%), Gaps = 2/36 (5%)
Query: 2 CSLCGKSL--SGDIFMYRGDTPFCSEECRQQQIEVD 35
C LC K L + DI+MYRGDTPFCSEECRQ+QIE D
Sbjct: 101 CFLCKKPLGDNRDIYMYRGDTPFCSEECRQEQIERD 136
>AT4G17670.1 | chr4:9833948-9834663 REVERSE LENGTH=160
Length = 159
Score = 55.5 bits (132), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 29/36 (80%), Gaps = 2/36 (5%)
Query: 2 CSLCGKSL--SGDIFMYRGDTPFCSEECRQQQIEVD 35
C LC K L + DIFMYRGDTPFCSEECR++QIE D
Sbjct: 80 CFLCKKRLGDNRDIFMYRGDTPFCSEECREEQIERD 115
>AT2G44670.1 | chr2:18425279-18425673 FORWARD LENGTH=94
Length = 93
Score = 52.0 bits (123), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 2 CSLCGKSL--SGDIFMYRGDTPFCSEECRQQQIEVD 35
CSLC K L + DIFMYRGD FCS ECR++QIE D
Sbjct: 20 CSLCRKHLGLNSDIFMYRGDKAFCSNECREEQIESD 55
>AT1G22160.1 | chr1:7823238-7823774 FORWARD LENGTH=148
Length = 147
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
Query: 2 CSLCGKSLSG--DIFMYRGDTPFCSEECRQQQIEVD 35
CSLC + L DI+MYRGD FCS ECRQQQI VD
Sbjct: 82 CSLCKRLLVHGRDIYMYRGDRAFCSLECRQQQITVD 117
>AT5G65040.1 | chr5:25977864-25978350 REVERSE LENGTH=114
Length = 113
Score = 48.9 bits (115), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 28/36 (77%), Gaps = 2/36 (5%)
Query: 2 CSLCGKSL--SGDIFMYRGDTPFCSEECRQQQIEVD 35
CSLC +SL DI+MYRG+ FCS ECR++QI++D
Sbjct: 61 CSLCNRSLCHHRDIYMYRGNNAFCSLECREKQIKLD 96
>AT1G53903.1 | chr1:20132363-20132842 FORWARD LENGTH=127
Length = 126
Score = 45.1 bits (105), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 2 CSLCGKSLS--GDIFMYRGDTPFCSEECRQQQIEVD 35
C LC K L D++MYRGD FCS ECR+ Q+ +D
Sbjct: 46 CHLCNKQLHQDKDVYMYRGDLGFCSRECRESQMLID 81
>AT1G53885.1 | chr1:20119798-20120277 FORWARD LENGTH=127
Length = 126
Score = 45.1 bits (105), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 2 CSLCGKSLS--GDIFMYRGDTPFCSEECRQQQIEVD 35
C LC K L D++MYRGD FCS ECR+ Q+ +D
Sbjct: 46 CHLCNKQLHQDKDVYMYRGDLGFCSRECRESQMLID 81
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,167,568
Number of extensions: 19231
Number of successful extensions: 47
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 8
Length of query: 91
Length of database: 11,106,569
Length adjustment: 62
Effective length of query: 29
Effective length of database: 9,406,777
Effective search space: 272796533
Effective search space used: 272796533
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)