Os04g0585600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0585600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.01 | 0.244 | 11.2 | 0.281 | 0.55 | 0.503 | 0.545 | -0.751 | -0.248 | 23 | 25.4 | 604 | -- | -- |
| 27.8 | 0.246 | 11.2 | 0.492 | 0.589 | 0.463 | 0.459 | -- | -0.195 | 23.3 | 25.4 | 522 | -- | -- |
| 28.09 | 0.247 | 11.2 | 0.333 | 0.574 | 0.469 | -- | -0.505 | -0.221 | 22.9 | 25.4 | 559 | -- | -- |
| 28.47 | 0.249 | 11.2 | 0.476 | 0.571 | 0.441 | -- | -- | -0.171 | 22.7 | 25.48 | 613 | -- | -- |
| 41.4 | 0.3 | 11.2 | 0.177 | -- | 0.844 | -- | -0.794 | -0.342 | -- | 25.61 | 753 | -- | -- |
| 34.78 | 0.276 | 11.1 | 0.615 | 0.768 | -- | 0.302 | -- | 0.000914 | 21.9 | -- | -- | -- | -- |
| 35.12 | 0.278 | 11.1 | 0.604 | 0.768 | -- | -- | -- | 0.000695 | 21.9 | -- | -- | -- | -- |
| 42.3 | 0.303 | 11.2 | 0.381 | -- | 0.789 | -- | -- | -0.281 | -- | 25.5 | 747 | -- | -- |
| 34.01 | 0.272 | 11.2 | -- | 0.522 | 0.555 | -- | -- | -0.261 | 22.7 | 25.4 | 671 | -- | -- |
| 70.38 | 0.392 | 11.1 | 0.612 | -- | -- | -- | -- | 0.000474 | -- | -- | -- | -- | -- |
| 44.73 | 0.313 | 11.2 | -- | 0.769 | -- | -- | -- | -0.0665 | 21.9 | -- | -- | -- | -- |
| 45.36 | 0.314 | 11.2 | -- | -- | 0.91 | -- | -- | -0.286 | -- | 26.3 | 820 | -- | -- |
| 80.26 | 0.418 | 11.1 | -- | -- | -- | -- | -- | -0.0674 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.04 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 17 |
| 12 | 24.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 18 |
| 24 | 25.07 | temperature | 10 | 720 | > th | dose dependent | sin | 18 | NA |
| 26 | 25.12 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 9 |
| 36 | 25.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 37 | 25.24 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 11 |
| 130 | 25.81 | temperature | 10 | 10 | > th | dose dependent | sin | 15 | NA |
| 151 | 25.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 8 |
| 168 | 26.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 12 |
| 169 | 26.01 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 181 | 26.04 | temperature | 30 | 720 | < th | dose dependent | sin | 17 | NA |
| 185 | 26.06 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 11 |
| 189 | 26.07 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 233 | 26.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 248 | 26.21 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 9 |
| 263 | 26.24 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 8 |
| 278 | 26.27 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 15 |
| 279 | 26.27 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 3 |
| 286 | 26.28 | temperature | 15 | 10 | > th | dose dependent | rect. | 10 | 20 |
| 333 | 26.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 12 | 18 |
| 461 | 26.67 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 21 |
| 562 | 26.83 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 19 |
| 694 | 27.02 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 16 |
| 744 | 27.08 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 10 |
| 782 | 27.10 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 788 | 27.11 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 834 | 27.15 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 901 | 27.23 | temperature | 25 | 720 | > th | dose independent | rect. | 14 | 10 |