BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0585600 Os04g0585600|AK106073
         (240 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G41960.1  | chr5:16789760-16790868 FORWARD LENGTH=218          130   6e-31

>AT5G41960.1 | chr5:16789760-16790868 FORWARD LENGTH=218
          Length = 217

 Score =  130 bits (327), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 68/150 (45%), Positives = 84/150 (56%), Gaps = 2/150 (1%)

Query: 49  DAPFAAAIGACLLASLVLPTSXXX--XXXXXXXXXXXATDTRMGVMGIISLLPYFNWLSW 106
           DAP   AIGAC+L+S V P +                +TD R+  MGIIS +PYFNWLSW
Sbjct: 63  DAPLVTAIGACILSSFVFPVAKRVNDEEEEEENSAIVSTDMRLAAMGIISFIPYFNWLSW 122

Query: 107 IFAWLDSGKXXXXXXXXXXXXXXXXTNLSLSPEESWLPIASIFACILHVQLEASIRTGDI 166
           +FAWLD+GK                +NLS+SPEESWLPI SI   I+HVQLEASI  GD+
Sbjct: 123 VFAWLDTGKSRYAVYALVYLVPYLSSNLSISPEESWLPITSIVLGIIHVQLEASIANGDV 182

Query: 167 ETFRFVQRAWRLIFPSALKEDVQHRNKGKS 196
           ET  F +      F S  +   +   KGK+
Sbjct: 183 ETLAFFRNTSDDDFSSKKRIHFKKHFKGKN 212



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.133    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,796,731
Number of extensions: 129900
Number of successful extensions: 301
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 299
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 144
Effective length of database: 8,474,633
Effective search space: 1220347152
Effective search space used: 1220347152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)