BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0585600 Os04g0585600|AK106073
         (240 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0585600  Conserved hypothetical protein                      331   2e-91

>Os04g0585600 Conserved hypothetical protein
          Length = 240

 Score =  331 bits (849), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 170/223 (76%), Positives = 170/223 (76%)

Query: 18  STSHXXXXXVTHPXXXXXXXXXXXXXXXXXXDAPFAAAIGACLLASLVLPTSXXXXXXXX 77
           STSH     VTHP                  DAPFAAAIGACLLASLVLPTS        
Sbjct: 18  STSHGGGGGVTHPLRPRLQRRALACRADLQQDAPFAAAIGACLLASLVLPTSRGRRDDDE 77

Query: 78  XXXXXXATDTRMGVMGIISLLPYFNWLSWIFAWLDSGKXXXXXXXXXXXXXXXXTNLSLS 137
                 ATDTRMGVMGIISLLPYFNWLSWIFAWLDSGK                TNLSLS
Sbjct: 78  EEGEFGATDTRMGVMGIISLLPYFNWLSWIFAWLDSGKRRYLFYAAAYLAPYLRTNLSLS 137

Query: 138 PEESWLPIASIFACILHVQLEASIRTGDIETFRFVQRAWRLIFPSALKEDVQHRNKGKSI 197
           PEESWLPIASIFACILHVQLEASIRTGDIETFRFVQRAWRLIFPSALKEDVQHRNKGKSI
Sbjct: 138 PEESWLPIASIFACILHVQLEASIRTGDIETFRFVQRAWRLIFPSALKEDVQHRNKGKSI 197

Query: 198 RMGSGNRRIPSAHESREKLRNSDIFKRRLDEPNDEKQNKSDWN 240
           RMGSGNRRIPSAHESREKLRNSDIFKRRLDEPNDEKQNKSDWN
Sbjct: 198 RMGSGNRRIPSAHESREKLRNSDIFKRRLDEPNDEKQNKSDWN 240



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.133    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,988,470
Number of extensions: 205439
Number of successful extensions: 367
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 366
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 142
Effective length of database: 11,918,829
Effective search space: 1692473718
Effective search space used: 1692473718
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)