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Os04g0584500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.38 (0.0613) R2 : 0.78
β1 : -3.57 (0.226) R2dD : 0.127 R2D : 0.027
β2 : 4.86 (0.159) R2dC : 0.496 R2C : 0.343
β3 : 2.2 (0.192) R2dE : 0.0693 R2E : -0.103
β4 : 5.86 (0.641) R2dD*C : 0.0432 R2D*C : -0.041
β5 : 8.13 (0.839) R2dD*E : 0.0485 R2D*E : -0.0263
γ1 : -2.26 (0.131) R2dN8 : 0.195 R2N8 : 0.093
σ : 1.15
deviance : 603.12
__
_____
C
peak time of C : 20.9
E
wheather : radiation
threshold : 0.4086
memory length : 224
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 22.3
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
603.12 1.15 8.38 -3.57 4.86 2.2 5.86 8.13 -2.26 20.9 0.4086 224 22.3 --
667.46 1.2 8.41 -3.98 4.49 2.28 4.46 -- -2.32 21.4 6.683 56 21.3 --
678.35 1.21 8.34 -3.73 4.6 2.62 -- 5.63 -2.19 20.1 0.6988 210 1.75 --
751.76 1.28 8.33 -4.04 4.61 2.56 -- -- -2.16 21 6.79 57 21.7 --
749.03 1.28 8.23 -3.92 -- 4.35 -- 5.31 -2.27 -- 105.4 4 7.72 --
742.15 1.28 8.35 -3.78 4.45 -- 5.39 -- -2.29 22.4 -- -- -- --
857.89 1.37 8.36 -3.99 4.44 -- -- -- -2.3 22.2 -- -- -- --
859.56 1.37 8.25 -3.95 -- 4.4 -- -- -2.29 -- 267.1 3 7.83 --
1184.91 1.6 8.25 -- 4.7 2.38 -- -- -1.74 20.8 3.888 101 22.2 --
2054.54 2.12 8.24 -3.92 -- -- -- -- -2.29 -- -- -- -- --
1276.67 1.67 8.26 -- 4.42 -- -- -- -1.86 22.2 -- -- -- --
1276.86 1.66 8.14 -- -- 4.41 -- -- -1.85 -- 438.7 3 7.9 --
2460.09 2.32 8.14 -- -- -- -- -- -1.86 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 604.42 temperature 10.0 270 > th dose dependent rect. 11 16
3 605.25 atmosphere 1015.0 1440 < th dose independent rect. 3 4
4 606.39 temperature 10.0 270 > th dose dependent rect. 13 14
7 610.17 temperature 20.0 270 > th dose independent rect. 9 10
8 610.66 temperature 15.0 270 > th dose independent rect. 5 20
10 611.89 humidity 80.0 270 > th dose independent rect. 23 7
16 614.00 temperature 15.0 270 > th dose independent rect. 3 23
19 614.12 radiation 1.0 270 < th dose dependent sin 5 NA
28 616.65 radiation 1.0 270 < th dose dependent rect. 24 16
29 616.78 temperature 10.0 10 > th dose dependent rect. 6 10
35 617.23 temperature 30.0 720 < th dose dependent rect. 14 10
36 617.26 radiation 1.0 270 < th dose dependent rect. 24 11
38 617.32 temperature 20.0 30 > th dose independent rect. 11 19
39 617.42 humidity 90.0 10 < th dose independent rect. 6 10
47 618.08 temperature 10.0 90 > th dose dependent rect. 6 9
50 618.33 radiation 40.0 10 < th dose dependent rect. 12 18
62 618.94 humidity 60.0 270 > th dose dependent rect. 23 7
63 618.96 temperature 10.0 90 > th dose dependent rect. 15 14
73 619.83 wind 3.0 270 < th dose independent rect. 23 7
85 620.40 temperature 10.0 270 > th dose dependent rect. 8 21
86 620.43 radiation 1.0 270 < th dose independent rect. 24 15
88 620.46 humidity 80.0 30 > th dose independent rect. 24 6
91 620.54 radiation 20.0 4320 < th dose independent rect. 3 3
94 620.57 atmosphere 1015.0 1440 < th dose independent rect. 1 6
96 620.68 wind 7.0 270 < th dose dependent rect. 23 6
100 620.81 temperature 10.0 720 > th dose dependent rect. 11 9
103 620.84 radiation 1.0 270 < th dose independent rect. 24 11
107 620.89 humidity 70.0 10 > th dose dependent rect. 24 8
110 621.00 humidity 70.0 10 > th dose dependent rect. 24 6
129 621.65 humidity 80.0 10 > th dose dependent rect. 2 12
130 621.66 humidity 80.0 90 > th dose dependent rect. 1 14
133 621.81 temperature 15.0 270 > th dose independent rect. 14 14
146 622.20 radiation 1.0 270 > th dose independent sin 6 NA
148 622.24 wind 5.0 30 < th dose dependent rect. 24 6
154 622.37 humidity 80.0 10 > th dose independent rect. 2 4
160 622.59 temperature 10.0 270 > th dose dependent rect. 23 6
163 622.79 temperature 10.0 720 > th dose dependent rect. 8 15
165 622.81 humidity 80.0 10 > th dose dependent sin 4 NA
166 622.82 radiation 1.0 270 < th dose independent sin 6 NA
181 623.29 radiation 1.0 270 < th dose independent rect. 23 8
185 623.36 humidity 70.0 10 > th dose dependent rect. 2 4
193 623.62 humidity 80.0 10 > th dose dependent rect. 24 14
198 623.75 radiation 1.0 90 > th dose independent sin 3 NA
202 623.83 humidity 80.0 10 > th dose dependent rect. 2 6
218 624.15 temperature 10.0 720 > th dose dependent rect. 13 7
230 624.50 temperature 20.0 90 > th dose independent rect. 2 17
234 624.75 radiation 1.0 270 > th dose independent rect. 9 20
242 624.87 radiation 1.0 270 > th dose independent rect. 9 10
259 625.02 temperature 10.0 720 > th dose dependent rect. 15 7
272 625.36 temperature 20.0 270 > th dose independent rect. 5 8
273 625.36 humidity 80.0 90 > th dose dependent rect. 1 16
285 625.64 humidity 50.0 14400 > th dose independent rect. 1 8
296 625.83 temperature 10.0 720 > th dose dependent rect. 9 12
306 625.99 humidity 90.0 30 > th dose independent rect. 2 10
321 626.24 humidity 90.0 30 < th dose independent sin 2 NA
325 626.30 wind 1.0 270 > th dose independent rect. 9 10
327 626.33 temperature 10.0 720 > th dose dependent sin 20 NA
340 626.60 temperature 20.0 90 > th dose independent rect. 24 19
347 626.86 temperature 10.0 10 > th dose dependent rect. 16 14
354 626.99 radiation 1.0 270 > th dose independent sin 20 NA
356 627.03 radiation 1.0 270 < th dose independent rect. 3 22
395 627.65 wind 3.0 30 < th dose independent rect. 24 6
403 627.80 radiation 1.0 270 < th dose independent rect. 4 20
409 627.97 radiation 1.0 270 < th dose dependent rect. 3 21
410 627.98 humidity 90.0 30 > th dose independent rect. 2 14
417 628.08 temperature 30.0 270 < th dose independent rect. 19 14
426 628.23 atmosphere 1010.0 270 < th dose independent rect. 23 6
434 628.38 precipitation 0.1 270 < th dose independent rect. 9 10
435 628.38 precipitation 0.1 270 < th dose dependent rect. 9 10
438 628.49 precipitation 0.1 270 < th dose independent rect. 4 10
439 628.49 precipitation 0.1 270 < th dose dependent rect. 4 10
445 628.58 wind 5.0 10 < th dose dependent rect. 2 4
452 628.69 temperature 30.0 270 < th dose dependent rect. 17 15
453 628.71 radiation 30.0 14400 < th dose independent rect. 16 9
468 628.85 humidity 90.0 10 < th dose independent rect. 2 14
476 628.95 wind 1.0 270 > th dose independent rect. 19 14
479 628.97 wind 7.0 270 < th dose independent rect. 5 9
495 629.26 temperature 10.0 10 > th dose dependent rect. 2 4
497 629.27 temperature 15.0 10 > th dose independent rect. 6 20
498 629.28 temperature 30.0 720 < th dose dependent rect. 19 5
503 629.34 radiation 30.0 14400 < th dose independent rect. 16 11
508 629.45 humidity 80.0 30 > th dose independent rect. 24 8
514 629.49 radiation 20.0 4320 < th dose independent rect. 1 5
518 629.53 wind 9.0 14400 < th dose independent rect. 22 3
520 629.56 wind 9.0 270 < th dose independent rect. 5 19
523 629.59 temperature 10.0 270 > th dose dependent sin 16 NA
549 629.93 humidity 50.0 14400 > th dose independent rect. 3 6
558 630.02 radiation 1.0 720 < th dose dependent rect. 6 18
569 630.13 temperature 10.0 270 > th dose independent rect. 24 5
570 630.13 temperature 30.0 270 < th dose independent rect. 24 5
571 630.13 humidity 50.0 270 > th dose independent rect. 24 5
574 630.13 atmosphere 995.0 270 > th dose independent rect. 24 5
575 630.13 radiation 20.0 270 < th dose independent rect. 24 5
583 630.15 wind 9.0 270 < th dose independent rect. 24 5
590 630.25 wind 9.0 270 < th dose independent rect. 9 10
608 630.41 wind 9.0 30 < th dose dependent rect. 16 14
611 630.43 atmosphere 995.0 10 > th dose independent rect. 6 10
618 630.54 radiation 1.0 720 < th dose independent rect. 7 17
624 630.57 atmosphere 1015.0 270 < th dose independent rect. 9 10
625 630.57 temperature 10.0 270 > th dose independent rect. 19 14
626 630.57 humidity 50.0 270 > th dose independent rect. 19 14
627 630.57 atmosphere 995.0 270 > th dose independent rect. 19 14
629 630.64 wind 9.0 270 < th dose independent rect. 19 14
656 631.07 temperature 10.0 30 > th dose dependent rect. 24 6
663 631.14 radiation 40.0 270 < th dose independent rect. 19 14
672 631.29 wind 9.0 270 < th dose independent rect. 14 14
679 631.39 wind 9.0 10 < th dose independent rect. 6 10
686 631.46 temperature 30.0 720 < th dose dependent sin 17 NA
691 631.48 precipitation 0.1 270 < th dose independent rect. 14 14
692 631.48 precipitation 0.1 270 < th dose dependent rect. 14 14
704 631.57 atmosphere 995.0 270 > th dose independent rect. 4 10
705 631.57 atmosphere 1015.0 270 < th dose independent rect. 4 10
764 632.03 precipitation 0.1 270 < th dose independent rect. 24 5
765 632.03 precipitation 0.1 270 < th dose dependent rect. 24 5
769 632.08 precipitation 0.1 10 < th dose independent rect. 6 10
771 632.08 precipitation 0.1 10 < th dose dependent rect. 6 10
779 632.14 humidity 60.0 14400 > th dose independent rect. 3 4
781 632.16 radiation 30.0 14400 < th dose independent rect. 16 1
795 632.26 wind 9.0 10 < th dose independent rect. 16 14
796 632.26 temperature 30.0 10 < th dose dependent rect. 19 7
809 632.35 radiation 30.0 10 < th dose independent rect. 16 14
811 632.36 temperature 10.0 10 > th dose independent rect. 6 10
813 632.36 atmosphere 1015.0 10 < th dose independent rect. 6 10
814 632.36 temperature 10.0 10 > th dose independent rect. 16 14
818 632.44 humidity 90.0 30 > th dose independent sin 4 NA
828 632.53 wind 9.0 10 < th dose independent rect. 6 20
868 632.94 radiation 30.0 14400 < th dose independent rect. 16 7
907 633.18 radiation 1.0 10 > th dose independent rect. 6 10
926 633.27 temperature 30.0 10 < th dose dependent rect. 17 9
932 633.30 temperature 20.0 270 > th dose independent rect. 9 20
934 633.34 wind 9.0 10 < th dose independent rect. 2 4
935 633.34 temperature 10.0 10 > th dose independent rect. 2 4
937 633.34 temperature 30.0 10 < th dose independent rect. 2 4
938 633.34 humidity 50.0 10 > th dose independent rect. 2 4
941 633.34 atmosphere 995.0 10 > th dose independent rect. 2 4
942 633.34 atmosphere 1010.0 10 < th dose independent rect. 2 4
944 633.34 radiation 20.0 10 < th dose independent rect. 2 4
970 633.51 wind 3.0 10 < th dose independent rect. 2 4
971 633.53 radiation 40.0 10 < th dose dependent rect. 2 4
986 633.68 radiation 1.0 90 > th dose independent rect. 4 11