BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0584500 Os04g0584500|AK099968
         (290 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06880.2  | chr3:2170516-2175686 REVERSE LENGTH=1265            50   2e-06

>AT3G06880.2 | chr3:2170516-2175686 REVERSE LENGTH=1265
          Length = 1264

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 7/140 (5%)

Query: 145 SDAAVQDKGRDEDEVWLRDVTAALLGSGRRPFLEALSMCMSSPNHDLAAVCLTTAAWLSR 204
           SD  +QD G D    W   +   ++ +G+  F   L   + S N  ++  CL   AWLS 
Sbjct: 822 SDECLQDTGIDG---WCCKIARRIIDTGKATFC-GLQEGLKSKNKSVSKACLIAIAWLSI 877

Query: 205 SLASIDAADVQLAAFSALIPRLKQRLAGDRSQAQHRVLASVTLYNFSKIPDCRALLMLLA 264
            + S     ++ +A   L+  + Q L     + + R+LA + +YNFS       L+   +
Sbjct: 878 EI-SKGPNSLKYSACEVLLDEVAQFLHPGL-ELEERLLACICIYNFSSGKGIHKLVNF-S 934

Query: 265 DGLRDHLVELAELTWTAGQL 284
           +G+R+ L  L+ +TW A +L
Sbjct: 935 EGVRESLRRLSHVTWMADEL 954



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,997,920
Number of extensions: 158674
Number of successful extensions: 365
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 192
Effective length of database: 8,419,801
Effective search space: 1616601792
Effective search space used: 1616601792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 111 (47.4 bits)